Last updated: 2024-04-02

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Knit directory: BITHub-preprocessing/

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Set-up

This R markdown document contains the complete code for the prep-rocessing of bulk RNA-sequencing files for Brain Integrative Transcriptome Hub (BITHub). All datasets were retrieved as described in Table 1 in the GitHub Repo.

In order to rerun the scripts - make sure to change the directories to the location of where the input files for preprocessing are stored. All directories are defined in each dataset section.

All other files are stored within the data folder of this R workflow directory.

library(recount3)
library(magrittr)
library(tibble)
library(reshape2)
library(SummarizedExperiment)
library(corrplot)
library(dplyr)
library(ggvenn)
library(pander)
library(gridExtra)
library(variancePartition)
library(DT)
library(EnsDb.Hsapiens.v86)
library(singscore)
library(AnnotationHub)
library(stargazer)
library(ggfortify)
library(glue)
library(cowplot)
library(broom)
library(glmpca)
library(DT)
library(naniar)
source("code/preprocess/functions.R")
source("code/preprocess/def_stages.R")
strc_acr <- map_df(structure_acronym, ~as.data.frame(.x), .id="id") %>% 
  set_colnames("StructureAcronym")
colnames(strc_acr)[2] = c("Structure")

rgns = map_df(regions, ~as.data.frame(.x), .id="id") %>% 
  set_colnames("Regions")
colnames(rgns)[2] = c("StructureAcronym")


rgns_ftl = map_df(regions_fetal, ~as.data.frame(.x), .id="id") %>% 
  set_colnames("Regions")
colnames(rgns_ftl)[2] = c("StructureAcronym")

Directories for all datasets

dir = file.path("/home/neuro/Documents/BrainData/Bulk")

Datasets to preprocess

BrainSeq

bseq = file.path(dir, "Brainseq")
bseq.annot = read.csv(here::here("data/annotations/BrainSeq-metadata-annot.csv"), header = TRUE)
load(file.path(bseq, "rse_gene_unfiltered.Rdata"), envir = .GlobalEnv)
load(file.path(bseq,"methprop_pd.Rdata"), envir = .GlobalEnv)
x = rse_gene@colData 
x <- as.data.frame(x)
x <- as.data.frame(t(x))
replicated <- colnames(x)[grep(",", x["SAMPLE_ID",])]
y <- as.list(x)
y[replicated] <- lapply(y[replicated], function(z) {
  # which variables to merge
  to.weight <- which(sapply(z, length) > 1 & sapply(z, class) %in% c("numeric", "integer"))
  # weighting of the merge
  weighting <- z$numReads # total reads
  weighting <- weighting / sum(weighting) # rather than a straight average, it's based on the number of reads
  
  # apply weighting
  z[to.weight] <- lapply(z[to.weight], function(zz) {
    if (length(weighting) == length(zz)) {
      sum(weighting * zz)
      } else {
          NaN
        }
        
      })
      
      # quickly fix character variables
      char <- which(sapply(z, length) > 1 & sapply(z, class) == "character")
      z[char] <- lapply(z[char], function(zz) {
        paste(zz, collapse = " & ")
      })
      
      return(z)
    })
    
    w <- lapply(y, as.data.frame)
    w <- do.call("rbind", w)
    
    comp <- as.data.frame(pd)
    comp <- comp[,57:64]
    m <- match(rownames(comp), rownames(w)) # they are
    md<- cbind(w, comp[m,])
colnames(md) = bseq.annot$BITColumnName[match(colnames(md), bseq.annot$OriginalMetadataColumnName)]
    
    
    # Adding features 
md %<>% 
  rownames_to_column("SampleID") %>%
  mutate(Period = ifelse(.$AgeNumeric > 0, "Postnatal", "Prenatal"), 
                   StructureAcronym = gsub("HIPPO", "HIP", .$StructureAcronym),
                   Diagnosis = gsub("Schizo", "Schizophrenia", .$Diagnosis)) %>%
      mutate(Regions = add_feature(.$StructureAcronym, regions)) %>% 
      mutate(Age_rounded = as.character(sapply(na.omit(.$AgeNumeric), num_to_round))) %>% as.data.frame() %>%
      mutate(AgeInterval = as.character(add_feature(.$Age_rounded, age_intervals))) %>% 
      dplyr::select(-Age_rounded) %>%
      dplyr::select("SampleID", everything()) %>%
      as.data.frame()
md %>% 
  DT::datatable(caption = "BrainSeq Metadata after harmonizing column names, ages and structure acronyms")
exp = rse_gene@assays@.xData$data$rpkm
rownames(exp) <- sub("\\.[0-9]*$", "", rownames(exp))

Export

write.csv(exp, file = "/home/neuro/Documents/BrainData/Bulk/Brainseq/Formatted/BrainSeq-exp.csv")
write.csv(md, file = "/home/neuro/Documents/BrainData/Bulk/Brainseq/Formatted/BrainSeq-metadata.csv")

BrainSpan

bspan.annot = read.csv(here::here("data/annotations/BrainSpan-metadata-annot.csv"), header = TRUE)

bspan = file.path(dir, "BrainSpan")
columns.metadata = read.csv(file.path(bspan, "Kang/genes_matrix_csv/columns_metadata.csv"), header = TRUE)
exp = read.csv(file.path(bspan, "Kang/genes_matrix_csv/expression_matrix.csv"), header= FALSE, row.names= 1)
rows.metadata = read.csv(file.path(bspan, "Kang/genes_matrix_csv/rows_metadata.csv"))
colnames(columns.metadata) = bspan.annot$BITColumnName[match(colnames(columns.metadata),bspan.annot$OriginalMetadataColumnName)]
md = columns.metadata %>% 
      mutate(Stage = add_feature(.$Age, stages), 
             AgeInterval = add_feature(.$Age, age_intervals), 
             Diagnosis = "Control", 
             Age = gsub(" ","_", .$Age)) %>%  
      mutate(SampleID = paste(DonorID, Age, StructureAcronym, Stage, sep = "_"), 
             age_for_mRIN = gsub("_", "", .$Age), 
             DonorName = gsub("\\.","_", .$DonorName),
            StructureAcronym = gsub("DFC", "DLPFC", StructureAcronym), 
            StructureAcronym = gsub("MFC", "ACC", StructureAcronym)) %>% 
  mutate(Regions = add_feature(.$StructureAcronym, regions)) %>%
      mutate('sample name' = paste(DonorName, age_for_mRIN,Sex ,StructureAcronym, sep = "//")) %>% 
      dplyr::select("SampleID", everything())

md$AgeNumeric[grepl("pcw", md$Age, ignore.case = TRUE)]<-
      md$Age[grepl("pcw", md$Age)] %>%  str_remove("_pcw")%>% 
      as.numeric() %>% `-` (40) %>% divide_by(52)
md$AgeNumeric[grepl("mos", md$Age, ignore.case = TRUE)] <- 
      md$Age[grepl("_mos", md$Age)] %>%  str_remove("_mos") %>% 
      as.numeric() %>% divide_by(12)
md$AgeNumeric[grepl("yrs", md$Age, ignore.case = TRUE)] <- 
      md$Age[grepl("_yrs", md$Age)] %>%  str_remove("_yrs") %>% 
      as.numeric 
    
md %<>% mutate(Period = ifelse(.$AgeNumeric >= 0, "Postnatal", "Prenatal"), 
                   colname = paste(DonorName, Age, StructureAcronym, sep = "_"))
colnames(exp) = md$SampleID
rownames(exp) <- rows.metadata$ensembl_gene_id
md.excel = read_excel(here::here("data/annotations/BrainSpan-additional.xlsx"),sheet =2, col_names = TRUE, skip =1) %>% 
      as.data.frame() %>% mutate_at(.vars = "AllenInstituteID", 
                                    .funs = gsub, pattern = "\\.", replacement = "\\_") %>%
      mutate_at(.vars = "Age", .funs = gsub, pattern = "PCW", replacement = "_pcw") %>% 
      mutate_at(.vars = "Age", .funs = gsub, pattern = "M", replacement = "_mos") %>%
      mutate_at(.vars = "Age", .funs = gsub, pattern = "Y", replacement = "_yrs") %>%
      mutate_at(.vars = "Region/Area", .funs = gsub, pattern = "\\/", replacement = "-") %>% 
      mutate(colname = paste(AllenInstituteID, Age, `Region/Area`, sep = "_")) %>% 
      dplyr::select(-c(Agerange, Age, Description))

md = md %>% 
      left_join(.,md.excel, by = "colname", keep = TRUE)
md.excel = read_excel(here::here("data/annotations/BrainSpan-additional.xlsx"), sheet = 1, col_names = TRUE) %>% 
      as.data.frame() %>% 
      mutate_at(.vars="Internal ID", .funs = gsub, pattern = "\\.", replacement = "\\_") %>% 
      dplyr::rename("Braincode" = "External ID")

md %<>% 
  left_join(md.excel, by ="Braincode") %>% 
      dplyr::select(-c("Age.y", "colname.y", "colname.x", "Gender", AllenInstituteID,
                     "Region/Area", "age_for_mRIN", "sample name", "Internal ID")) %>% 
      dplyr::rename("Ethnicity"="Ethn.")  %>% 
  distinct(SampleID, .keep_all = TRUE)


   
md = md[!duplicated(md[,c('column_num')]),]
md %>% 
      dplyr::arrange(column_num)
                    SampleID column_num   DonorID    DonorName  Age.x Sex
1        13058_8_pcw_Ocx_s2a          1     13058  H376_IIA_51  8_pcw   M
2    13058_8_pcw_M1C-S1C_s2a          2     13058  H376_IIA_51  8_pcw   M
3        13058_8_pcw_AMY_s2a          3     13058  H376_IIA_51  8_pcw   M
4        13058_8_pcw_MGE_s2a          4     13058  H376_IIA_51  8_pcw   M
5        13058_8_pcw_STC_s2a          5     13058  H376_IIA_51  8_pcw   M
6        13058_8_pcw_URL_s2a          6     13058  H376_IIA_51  8_pcw   M
7        13058_8_pcw_CGE_s2a          7     13058  H376_IIA_51  8_pcw   M
8        13058_8_pcw_DTH_s2a          8     13058  H376_IIA_51  8_pcw   M
9        13058_8_pcw_MFC_s2a          9     13058  H376_IIA_51  8_pcw   M
10       13058_8_pcw_DFC_s2a         10     13058  H376_IIA_51  8_pcw   M
11       13058_8_pcw_OFC_s2a         11     13058  H376_IIA_51  8_pcw   M
12       13058_8_pcw_LGE_s2a         12     13058  H376_IIA_51  8_pcw   M
13       13058_8_pcw_ITC_s2a         13     13058  H376_IIA_51  8_pcw   M
14       13058_8_pcw_HIP_s2a         14     13058  H376_IIA_51  8_pcw   M
15       13058_8_pcw_VFC_s2a         15     13058  H376_IIA_51  8_pcw   M
16       13058_8_pcw_PCx_s2a         16     13058  H376_IIA_51  8_pcw   M
17       12833_9_pcw_DFC_s2a         17     12833  H376_IIA_50  9_pcw   M
18       12833_9_pcw_MFC_s2a         18     12833  H376_IIA_50  9_pcw   M
19       12833_9_pcw_AMY_s2a         19     12833  H376_IIA_50  9_pcw   M
20       12833_9_pcw_DTH_s2a         20     12833  H376_IIA_50  9_pcw   M
21       12833_9_pcw_URL_s2a         21     12833  H376_IIA_50  9_pcw   M
22       12833_9_pcw_LGE_s2a         22     12833  H376_IIA_50  9_pcw   M
23   12833_9_pcw_M1C-S1C_s2a         23     12833  H376_IIA_50  9_pcw   M
24       12833_9_pcw_MGE_s2a         24     12833  H376_IIA_50  9_pcw   M
25       12833_9_pcw_TCx_s2a         25     12833  H376_IIA_50  9_pcw   M
26       12833_9_pcw_HIP_s2a         26     12833  H376_IIA_50  9_pcw   M
27       12833_9_pcw_Ocx_s2a         27     12833  H376_IIA_50  9_pcw   M
28       12833_9_pcw_CGE_s2a         28     12833  H376_IIA_50  9_pcw   M
29       12833_9_pcw_OFC_s2a         29     12833  H376_IIA_50  9_pcw   M
30       12833_9_pcw_PCx_s2a         30     12833  H376_IIA_50  9_pcw   M
31      12835_12_pcw_HIP_s2b         31     12835  H376_IIB_50 12_pcw   F
32      12835_12_pcw_DTH_s2b         32     12835  H376_IIB_50 12_pcw   F
33      12835_12_pcw_AMY_s2b         33     12835  H376_IIB_50 12_pcw   F
34      12835_12_pcw_A1C_s2b         34     12835  H376_IIB_50 12_pcw   F
35      12835_12_pcw_V1C_s2b         35     12835  H376_IIB_50 12_pcw   F
36      12835_12_pcw_MFC_s2b         36     12835  H376_IIB_50 12_pcw   F
37      12835_12_pcw_STR_s2b         37     12835  H376_IIB_50 12_pcw   F
38      12835_12_pcw_M1C_s2b         38     12835  H376_IIB_50 12_pcw   F
39      12835_12_pcw_DFC_s2b         39     12835  H376_IIB_50 12_pcw   F
40      12835_12_pcw_ITC_s2b         40     12835  H376_IIB_50 12_pcw   F
41      12835_12_pcw_VFC_s2b         41     12835  H376_IIB_50 12_pcw   F
42      12835_12_pcw_STC_s2b         42     12835  H376_IIB_50 12_pcw   F
43      12835_12_pcw_IPC_s2b         43     12835  H376_IIB_50 12_pcw   F
44      12835_12_pcw_OFC_s2b         44     12835  H376_IIB_50 12_pcw   F
45      12835_12_pcw_S1C_s2b         45     12835  H376_IIB_50 12_pcw   F
46      12960_12_pcw_STC_s2b         46     12960  H376_IIB_51 12_pcw   F
47      12960_12_pcw_V1C_s2b         47     12960  H376_IIB_51 12_pcw   F
48      12960_12_pcw_A1C_s2b         48     12960  H376_IIB_51 12_pcw   F
49       12960_12_pcw_CB_s2b         49     12960  H376_IIB_51 12_pcw   F
50      12960_12_pcw_ITC_s2b         50     12960  H376_IIB_51 12_pcw   F
51      12960_12_pcw_IPC_s2b         51     12960  H376_IIB_51 12_pcw   F
52      12960_12_pcw_S1C_s2b         52     12960  H376_IIB_51 12_pcw   F
53      12960_12_pcw_DTH_s2b         53     12960  H376_IIB_51 12_pcw   F
54      12960_12_pcw_HIP_s2b         54     12960  H376_IIB_51 12_pcw   F
55      12960_12_pcw_DFC_s2b         55     12960  H376_IIB_51 12_pcw   F
56      12960_12_pcw_OFC_s2b         56     12960  H376_IIB_51 12_pcw   F
57      12960_12_pcw_M1C_s2b         57     12960  H376_IIB_51 12_pcw   F
58      12960_12_pcw_VFC_s2b         58     12960  H376_IIB_51 12_pcw   F
59      12960_12_pcw_AMY_s2b         59     12960  H376_IIB_51 12_pcw   F
60      12960_12_pcw_STR_s2b         60     12960  H376_IIB_51 12_pcw   F
61      13060_12_pcw_AMY_s2b         61     13060  H376_IIB_52 12_pcw   F
62      13060_12_pcw_M1C_s2b         62     13060  H376_IIB_52 12_pcw   F
63      13060_12_pcw_ITC_s2b         63     13060  H376_IIB_52 12_pcw   F
64      13060_12_pcw_VFC_s2b         64     13060  H376_IIB_52 12_pcw   F
65      13060_12_pcw_STR_s2b         65     13060  H376_IIB_52 12_pcw   F
66      13060_12_pcw_CBC_s2b         66     13060  H376_IIB_52 12_pcw   F
67      13060_12_pcw_DTH_s2b         67     13060  H376_IIB_52 12_pcw   F
68      13060_12_pcw_DFC_s2b         68     13060  H376_IIB_52 12_pcw   F
69      13060_12_pcw_OFC_s2b         69     13060  H376_IIB_52 12_pcw   F
70      13060_12_pcw_S1C_s2b         70     13060  H376_IIB_52 12_pcw   F
71      13060_12_pcw_V1C_s2b         71     13060  H376_IIB_52 12_pcw   F
72      13060_12_pcw_MFC_s2b         72     13060  H376_IIB_52 12_pcw   F
73      13060_12_pcw_HIP_s2b         73     13060  H376_IIB_52 12_pcw   F
74      13060_12_pcw_IPC_s2b         74     13060  H376_IIB_52 12_pcw   F
75      13060_12_pcw_A1C_s2b         75     13060  H376_IIB_52 12_pcw   F
76      12820_13_pcw_STR_s3a         76     12820 H376_IIIA_50 13_pcw   M
77      12820_13_pcw_M1C_s3a         77     12820 H376_IIIA_50 13_pcw   M
78      12820_13_pcw_AMY_s3a         78     12820 H376_IIIA_50 13_pcw   M
79      12820_13_pcw_S1C_s3a         79     12820 H376_IIIA_50 13_pcw   M
80      12820_13_pcw_V1C_s3a         80     12820 H376_IIIA_50 13_pcw   M
81      12820_13_pcw_A1C_s3a         81     12820 H376_IIIA_50 13_pcw   M
82      12820_13_pcw_HIP_s3a         82     12820 H376_IIIA_50 13_pcw   M
83      12820_13_pcw_VFC_s3a         83     12820 H376_IIIA_50 13_pcw   M
84      12820_13_pcw_MFC_s3a         84     12820 H376_IIIA_50 13_pcw   M
85      12820_13_pcw_STC_s3a         85     12820 H376_IIIA_50 13_pcw   M
86      12820_13_pcw_OFC_s3a         86     12820 H376_IIIA_50 13_pcw   M
87      12820_13_pcw_IPC_s3a         87     12820 H376_IIIA_50 13_pcw   M
88      12820_13_pcw_DFC_s3a         88     12820 H376_IIIA_50 13_pcw   M
89      12820_13_pcw_ITC_s3a         89     12820 H376_IIIA_50 13_pcw   M
90      12834_13_pcw_STR_s3a         90     12834 H376_IIIA_51 13_pcw   F
91      12834_13_pcw_S1C_s3a         91     12834 H376_IIIA_51 13_pcw   F
92      12834_13_pcw_V1C_s3a         92     12834 H376_IIIA_51 13_pcw   F
93      12834_13_pcw_AMY_s3a         93     12834 H376_IIIA_51 13_pcw   F
94      12834_13_pcw_IPC_s3a         94     12834 H376_IIIA_51 13_pcw   F
95       12834_13_pcw_CB_s3a         95     12834 H376_IIIA_51 13_pcw   F
96      12834_13_pcw_DFC_s3a         96     12834 H376_IIIA_51 13_pcw   F
97      12834_13_pcw_OFC_s3a         97     12834 H376_IIIA_51 13_pcw   F
98      12834_13_pcw_STC_s3a         98     12834 H376_IIIA_51 13_pcw   F
99      12834_13_pcw_A1C_s3a         99     12834 H376_IIIA_51 13_pcw   F
100     12834_13_pcw_HIP_s3a        100     12834 H376_IIIA_51 13_pcw   F
101     12834_13_pcw_M1C_s3a        101     12834 H376_IIIA_51 13_pcw   F
102     12834_13_pcw_ITC_s3a        102     12834 H376_IIIA_51 13_pcw   F
103      12834_13_pcw_MD_s3a        103     12834 H376_IIIA_51 13_pcw   F
104     12834_13_pcw_MFC_s3a        104     12834 H376_IIIA_51 13_pcw   F
105     12834_13_pcw_VFC_s3a        105     12834 H376_IIIA_51 13_pcw   F
106     12888_13_pcw_S1C_s3a        106     12888 H376_IIIA_52 13_pcw   M
107     12888_13_pcw_DFC_s3a        107     12888 H376_IIIA_52 13_pcw   M
108      12888_13_pcw_CB_s3a        108     12888 H376_IIIA_52 13_pcw   M
109     12888_13_pcw_AMY_s3a        109     12888 H376_IIIA_52 13_pcw   M
110     12888_13_pcw_ITC_s3a        110     12888 H376_IIIA_52 13_pcw   M
111     12888_13_pcw_HIP_s3a        111     12888 H376_IIIA_52 13_pcw   M
112     12888_13_pcw_IPC_s3a        112     12888 H376_IIIA_52 13_pcw   M
113     12888_13_pcw_A1C_s3a        113     12888 H376_IIIA_52 13_pcw   M
114     12888_13_pcw_VFC_s3a        114     12888 H376_IIIA_52 13_pcw   M
115     12888_13_pcw_STR_s3a        115     12888 H376_IIIA_52 13_pcw   M
116     12888_13_pcw_OFC_s3a        116     12888 H376_IIIA_52 13_pcw   M
117     12888_13_pcw_MFC_s3a        117     12888 H376_IIIA_52 13_pcw   M
118     12888_13_pcw_V1C_s3a        118     12888 H376_IIIA_52 13_pcw   M
119     12888_13_pcw_M1C_s3a        119     12888 H376_IIIA_52 13_pcw   M
120     12287_16_pcw_VFC_s3b        120     12287 H376_IIIB_50 16_pcw   M
121     12287_16_pcw_OFC_s3b        121     12287 H376_IIIB_50 16_pcw   M
122     12287_16_pcw_STC_s3b        122     12287 H376_IIIB_50 16_pcw   M
123     12287_16_pcw_DFC_s3b        123     12287 H376_IIIB_50 16_pcw   M
124     12287_16_pcw_IPC_s3b        124     12287 H376_IIIB_50 16_pcw   M
125     12287_16_pcw_A1C_s3b        125     12287 H376_IIIB_50 16_pcw   M
126     12287_16_pcw_MFC_s3b        126     12287 H376_IIIB_50 16_pcw   M
127     12287_16_pcw_STR_s3b        127     12287 H376_IIIB_50 16_pcw   M
128      12287_16_pcw_MD_s3b        128     12287 H376_IIIB_50 16_pcw   M
129     12287_16_pcw_V1C_s3b        129     12287 H376_IIIB_50 16_pcw   M
130     12837_16_pcw_VFC_s3b        130     12837 H376_IIIB_51 16_pcw   M
131     12837_16_pcw_STC_s3b        131     12837 H376_IIIB_51 16_pcw   M
132     12837_16_pcw_IPC_s3b        132     12837 H376_IIIB_51 16_pcw   M
133     12837_16_pcw_A1C_s3b        133     12837 H376_IIIB_51 16_pcw   M
134      12837_16_pcw_MD_s3b        134     12837 H376_IIIB_51 16_pcw   M
135     12837_16_pcw_AMY_s3b        135     12837 H376_IIIB_51 16_pcw   M
136     12837_16_pcw_V1C_s3b        136     12837 H376_IIIB_51 16_pcw   M
137     12837_16_pcw_ITC_s3b        137     12837 H376_IIIB_51 16_pcw   M
138     12837_16_pcw_CBC_s3b        138     12837 H376_IIIB_51 16_pcw   M
139     12837_16_pcw_HIP_s3b        139     12837 H376_IIIB_51 16_pcw   M
140     12837_16_pcw_STR_s3b        140     12837 H376_IIIB_51 16_pcw   M
141     12837_16_pcw_OFC_s3b        141     12837 H376_IIIB_51 16_pcw   M
142     12837_16_pcw_DFC_s3b        142     12837 H376_IIIB_51 16_pcw   M
143     12837_16_pcw_M1C_s3b        143     12837 H376_IIIB_51 16_pcw   M
144     12837_16_pcw_MFC_s3b        144     12837 H376_IIIB_51 16_pcw   M
145     12837_16_pcw_S1C_s3b        145     12837 H376_IIIB_51 16_pcw   M
146     12879_16_pcw_HIP_s3b        146     12879 H376_IIIB_52 16_pcw   M
147     12879_16_pcw_ITC_s3b        147     12879 H376_IIIB_52 16_pcw   M
148     12879_16_pcw_DFC_s3b        148     12879 H376_IIIB_52 16_pcw   M
149     12879_16_pcw_IPC_s3b        149     12879 H376_IIIB_52 16_pcw   M
150     12879_16_pcw_STC_s3b        150     12879 H376_IIIB_52 16_pcw   M
151     12879_16_pcw_V1C_s3b        151     12879 H376_IIIB_52 16_pcw   M
152      12879_16_pcw_MD_s3b        152     12879 H376_IIIB_52 16_pcw   M
153     12879_16_pcw_STR_s3b        153     12879 H376_IIIB_52 16_pcw   M
154 12879_16_pcw_M1C-S1C_s3b        154     12879 H376_IIIB_52 16_pcw   M
155     12879_16_pcw_A1C_s3b        155     12879 H376_IIIB_52 16_pcw   M
156     12879_16_pcw_VFC_s3b        156     12879 H376_IIIB_52 16_pcw   M
157     12879_16_pcw_AMY_s3b        157     12879 H376_IIIB_52 16_pcw   M
158     12879_16_pcw_MFC_s3b        158     12879 H376_IIIB_52 16_pcw   M
159     12880_17_pcw_STR_s3b        159     12880 H376_IIIB_53 17_pcw   F
160     12880_17_pcw_STC_s3b        160     12880 H376_IIIB_53 17_pcw   F
161      12880_17_pcw_MD_s3b        161     12880 H376_IIIB_53 17_pcw   F
162     12880_17_pcw_A1C_s3b        162     12880 H376_IIIB_53 17_pcw   F
163     12880_17_pcw_HIP_s3b        163     12880 H376_IIIB_53 17_pcw   F
164     12880_17_pcw_DFC_s3b        164     12880 H376_IIIB_53 17_pcw   F
165     12880_17_pcw_VFC_s3b        165     12880 H376_IIIB_53 17_pcw   F
166     12880_17_pcw_IPC_s3b        166     12880 H376_IIIB_53 17_pcw   F
167 12880_17_pcw_M1C-S1C_s3b        167     12880 H376_IIIB_53 17_pcw   F
168     12880_17_pcw_V1C_s3b        168     12880 H376_IIIB_53 17_pcw   F
169     12880_17_pcw_CBC_s3b        169     12880 H376_IIIB_53 17_pcw   F
170     12880_17_pcw_OFC_s3b        170     12880 H376_IIIB_53 17_pcw   F
171     12880_17_pcw_AMY_s3b        171     12880 H376_IIIB_53 17_pcw   F
172     12880_17_pcw_MFC_s3b        172     12880 H376_IIIB_53 17_pcw   F
173      12885_19_pcw_STC_s4        173     12885   H376_IV_53 19_pcw   F
174      12885_19_pcw_IPC_s4        174     12885   H376_IV_53 19_pcw   F
175  12885_19_pcw_M1C-S1C_s4        175     12885   H376_IV_53 19_pcw   F
176      12885_19_pcw_MFC_s4        176     12885   H376_IV_53 19_pcw   F
177      12885_19_pcw_V1C_s4        177     12885   H376_IV_53 19_pcw   F
178      12885_19_pcw_HIP_s4        178     12885   H376_IV_53 19_pcw   F
179      12885_19_pcw_A1C_s4        179     12885   H376_IV_53 19_pcw   F
180       12885_19_pcw_MD_s4        180     12885   H376_IV_53 19_pcw   F
181      12885_19_pcw_VFC_s4        181     12885   H376_IV_53 19_pcw   F
182      12885_19_pcw_STR_s4        182     12885   H376_IV_53 19_pcw   F
183      12885_19_pcw_DFC_s4        183     12885   H376_IV_53 19_pcw   F
184      12365_21_pcw_CBC_s4        184     12365   H376_IV_51 21_pcw   F
185      12365_21_pcw_ITC_s4        185     12365   H376_IV_51 21_pcw   F
186      12886_21_pcw_MFC_s4        186     12886   H376_IV_54 21_pcw   M
187      12886_21_pcw_M1C_s4        187     12886   H376_IV_54 21_pcw   M
188      12886_21_pcw_STR_s4        188     12886   H376_IV_54 21_pcw   M
189      12886_21_pcw_HIP_s4        189     12886   H376_IV_54 21_pcw   M
190      12886_21_pcw_STC_s4        190     12886   H376_IV_54 21_pcw   M
191      12886_21_pcw_ITC_s4        191     12886   H376_IV_54 21_pcw   M
192      12886_21_pcw_AMY_s4        192     12886   H376_IV_54 21_pcw   M
193      12886_21_pcw_VFC_s4        193     12886   H376_IV_54 21_pcw   M
194      12886_21_pcw_OFC_s4        194     12886   H376_IV_54 21_pcw   M
195      12886_21_pcw_V1C_s4        195     12886   H376_IV_54 21_pcw   M
196      12886_21_pcw_S1C_s4        196     12886   H376_IV_54 21_pcw   M
197      12886_21_pcw_CBC_s4        197     12886   H376_IV_54 21_pcw   M
198      12886_21_pcw_IPC_s4        198     12886   H376_IV_54 21_pcw   M
199      12886_21_pcw_DFC_s4        199     12886   H376_IV_54 21_pcw   M
200      12288_24_pcw_HIP_s4        200     12288   H376_IV_50 24_pcw   M
201      12288_24_pcw_AMY_s4        201     12288   H376_IV_50 24_pcw   M
202      12288_24_pcw_DFC_s4        202     12288   H376_IV_50 24_pcw   M
203      12288_24_pcw_S1C_s4        203     12288   H376_IV_50 24_pcw   M
204       12288_24_pcw_MD_s4        204     12288   H376_IV_50 24_pcw   M
205      12288_24_pcw_STR_s4        205     12288   H376_IV_50 24_pcw   M
206      12288_24_pcw_A1C_s4        206     12288   H376_IV_50 24_pcw   M
207      12288_24_pcw_IPC_s4        207     12288   H376_IV_50 24_pcw   M
208      12288_24_pcw_OFC_s4        208     12288   H376_IV_50 24_pcw   M
209      12288_24_pcw_STC_s4        209     12288   H376_IV_50 24_pcw   M
210      12288_24_pcw_ITC_s4        210     12288   H376_IV_50 24_pcw   M
211      12288_24_pcw_VFC_s4        211     12288   H376_IV_50 24_pcw   M
212      12288_24_pcw_M1C_s4        212     12288   H376_IV_50 24_pcw   M
213      12288_24_pcw_MFC_s4        213     12288   H376_IV_50 24_pcw   M
214      12288_24_pcw_CBC_s4        214     12288   H376_IV_50 24_pcw   M
215      12288_24_pcw_V1C_s4        215     12288   H376_IV_50 24_pcw   M
216      12948_25_pcw_A1C_s5        216     12948    H376_V_51 25_pcw   F
217      12949_26_pcw_STC_s5        217     12949    H376_V_52 26_pcw   F
218      12949_26_pcw_V1C_s5        218     12949    H376_V_52 26_pcw   F
219      12949_26_pcw_DFC_s5        219     12949    H376_V_52 26_pcw   F
220      12295_35_pcw_CBC_s5        220     12295    H376_V_50 35_pcw   F
221      12295_35_pcw_VFC_s5        221     12295    H376_V_50 35_pcw   F
222  263195015_37_pcw_A1C_s5        222 263195015    H376_V_53 37_pcw   M
223  263195015_37_pcw_OFC_s5        223 263195015    H376_V_53 37_pcw   M
224  263195015_37_pcw_AMY_s5        224 263195015    H376_V_53 37_pcw   M
225  263195015_37_pcw_V1C_s5        225 263195015    H376_V_53 37_pcw   M
226  263195015_37_pcw_MFC_s5        226 263195015    H376_V_53 37_pcw   M
227   263195015_37_pcw_MD_s5        227 263195015    H376_V_53 37_pcw   M
228  263195015_37_pcw_CBC_s5        228 263195015    H376_V_53 37_pcw   M
229  263195015_37_pcw_STR_s5        229 263195015    H376_V_53 37_pcw   M
230  263195015_37_pcw_IPC_s5        230 263195015    H376_V_53 37_pcw   M
231  263195015_37_pcw_ITC_s5        231 263195015    H376_V_53 37_pcw   M
232  263195015_37_pcw_S1C_s5        232 263195015    H376_V_53 37_pcw   M
233  263195015_37_pcw_DFC_s5        233 263195015    H376_V_53 37_pcw   M
234  263195015_37_pcw_STC_s5        234 263195015    H376_V_53 37_pcw   M
235  263195015_37_pcw_M1C_s5        235 263195015    H376_V_53 37_pcw   M
236  263195015_37_pcw_VFC_s5        236 263195015    H376_V_53 37_pcw   M
237  263195015_37_pcw_HIP_s5        237 263195015    H376_V_53 37_pcw   M
238       12296_4_mos_STC_s6        238     12296   H376_VI_50  4_mos   M
239       12296_4_mos_STR_s6        239     12296   H376_VI_50  4_mos   M
240       12296_4_mos_V1C_s6        240     12296   H376_VI_50  4_mos   M
241       12296_4_mos_CBC_s6        241     12296   H376_VI_50  4_mos   M
242       12296_4_mos_HIP_s6        242     12296   H376_VI_50  4_mos   M
243        12296_4_mos_MD_s6        243     12296   H376_VI_50  4_mos   M
244       12296_4_mos_ITC_s6        244     12296   H376_VI_50  4_mos   M
245       12296_4_mos_AMY_s6        245     12296   H376_VI_50  4_mos   M
246       12296_4_mos_MFC_s6        246     12296   H376_VI_50  4_mos   M
247       12889_4_mos_M1C_s6        247     12889   H376_VI_51  4_mos   M
248       12889_4_mos_DFC_s6        248     12889   H376_VI_51  4_mos   M
249       12889_4_mos_OFC_s6        249     12889   H376_VI_51  4_mos   M
250       12889_4_mos_A1C_s6        250     12889   H376_VI_51  4_mos   M
251       12889_4_mos_STC_s6        251     12889   H376_VI_51  4_mos   M
252       12889_4_mos_VFC_s6        252     12889   H376_VI_51  4_mos   M
253       12889_4_mos_ITC_s6        253     12889   H376_VI_51  4_mos   M
254       12889_4_mos_AMY_s6        254     12889   H376_VI_51  4_mos   M
255       12890_4_mos_M1C_s6        255     12890   H376_VI_52  4_mos   M
256        12890_4_mos_MD_s6        256     12890   H376_VI_52  4_mos   M
257       12890_4_mos_OFC_s6        257     12890   H376_VI_52  4_mos   M
258       12890_4_mos_STR_s6        258     12890   H376_VI_52  4_mos   M
259       12890_4_mos_STC_s6        259     12890   H376_VI_52  4_mos   M
260       12890_4_mos_A1C_s6        260     12890   H376_VI_52  4_mos   M
261       12890_4_mos_HIP_s6        261     12890   H376_VI_52  4_mos   M
262       12890_4_mos_AMY_s6        262     12890   H376_VI_52  4_mos   M
263       12890_4_mos_MFC_s6        263     12890   H376_VI_52  4_mos   M
264       12890_4_mos_V1C_s6        264     12890   H376_VI_52  4_mos   M
265       12890_4_mos_ITC_s6        265     12890   H376_VI_52  4_mos   M
266       12890_4_mos_S1C_s6        266     12890   H376_VI_52  4_mos   M
267       12890_4_mos_IPC_s6        267     12890   H376_VI_52  4_mos   M
268       12890_4_mos_CBC_s6        268     12890   H376_VI_52  4_mos   M
269       12890_4_mos_DFC_s6        269     12890   H376_VI_52  4_mos   M
270       12890_4_mos_VFC_s6        270     12890   H376_VI_52  4_mos   M
271      12977_10_mos_S1C_s7        271     12977  H376_VII_51 10_mos   M
272      12977_10_mos_IPC_s7        272     12977  H376_VII_51 10_mos   M
273      12977_10_mos_STC_s7        273     12977  H376_VII_51 10_mos   M
274      12977_10_mos_DFC_s7        274     12977  H376_VII_51 10_mos   M
275      12977_10_mos_OFC_s7        275     12977  H376_VII_51 10_mos   M
276      12977_10_mos_MFC_s7        276     12977  H376_VII_51 10_mos   M
277      12977_10_mos_CBC_s7        277     12977  H376_VII_51 10_mos   M
278      12977_10_mos_ITC_s7        278     12977  H376_VII_51 10_mos   M
279       12977_10_mos_MD_s7        279     12977  H376_VII_51 10_mos   M
280      12977_10_mos_V1C_s7        280     12977  H376_VII_51 10_mos   M
281       12830_1_yrs_AMY_s7        281     12830 H376_VIII_51  1_yrs   F
282       12830_1_yrs_M1C_s7        282     12830 H376_VIII_51  1_yrs   F
283       12830_1_yrs_DFC_s7        283     12830 H376_VIII_51  1_yrs   F
284       12830_1_yrs_STC_s7        284     12830 H376_VIII_51  1_yrs   F
285       12830_1_yrs_V1C_s7        285     12830 H376_VIII_51  1_yrs   F
286       12830_1_yrs_MFC_s7        286     12830 H376_VIII_51  1_yrs   F
287       12830_1_yrs_OFC_s7        287     12830 H376_VIII_51  1_yrs   F
288       12830_1_yrs_ITC_s7        288     12830 H376_VIII_51  1_yrs   F
289       12830_1_yrs_S1C_s7        289     12830 H376_VIII_51  1_yrs   F
290       12830_1_yrs_VFC_s7        290     12830 H376_VIII_51  1_yrs   F
291       12830_1_yrs_CBC_s7        291     12830 H376_VIII_51  1_yrs   F
292       12830_1_yrs_A1C_s7        292     12830 H376_VIII_51  1_yrs   F
293        12830_1_yrs_MD_s7        293     12830 H376_VIII_51  1_yrs   F
294       12830_1_yrs_HIP_s7        294     12830 H376_VIII_51  1_yrs   F
295       12830_1_yrs_IPC_s7        295     12830 H376_VIII_51  1_yrs   F
296       12830_1_yrs_STR_s7        296     12830 H376_VIII_51  1_yrs   F
297       12979_2_yrs_VFC_s8        297     12979 H376_VIII_53  2_yrs   F
298       12979_2_yrs_IPC_s8        298     12979 H376_VIII_53  2_yrs   F
299       12979_2_yrs_S1C_s8        299     12979 H376_VIII_53  2_yrs   F
300       12979_2_yrs_ITC_s8        300     12979 H376_VIII_53  2_yrs   F
301        12979_2_yrs_MD_s8        301     12979 H376_VIII_53  2_yrs   F
302       12979_2_yrs_DFC_s8        302     12979 H376_VIII_53  2_yrs   F
303       12979_2_yrs_MFC_s8        303     12979 H376_VIII_53  2_yrs   F
304       12979_2_yrs_CBC_s8        304     12979 H376_VIII_53  2_yrs   F
305       12979_2_yrs_HIP_s8        305     12979 H376_VIII_53  2_yrs   F
306       12979_2_yrs_OFC_s8        306     12979 H376_VIII_53  2_yrs   F
307       12979_2_yrs_V1C_s8        307     12979 H376_VIII_53  2_yrs   F
308       12979_2_yrs_STC_s8        308     12979 H376_VIII_53  2_yrs   F
309       12836_3_yrs_STR_s8        309     12836 H376_VIII_52  3_yrs   F
310       12836_3_yrs_STC_s8        310     12836 H376_VIII_52  3_yrs   F
311       12836_3_yrs_IPC_s8        311     12836 H376_VIII_52  3_yrs   F
312       12836_3_yrs_ITC_s8        312     12836 H376_VIII_52  3_yrs   F
313       12836_3_yrs_CBC_s8        313     12836 H376_VIII_52  3_yrs   F
314       12836_3_yrs_AMY_s8        314     12836 H376_VIII_52  3_yrs   F
315       12836_3_yrs_VFC_s8        315     12836 H376_VIII_52  3_yrs   F
316       12836_3_yrs_M1C_s8        316     12836 H376_VIII_52  3_yrs   F
317       12836_3_yrs_A1C_s8        317     12836 H376_VIII_52  3_yrs   F
318        12836_3_yrs_MD_s8        318     12836 H376_VIII_52  3_yrs   F
319       12836_3_yrs_V1C_s8        319     12836 H376_VIII_52  3_yrs   F
320       12980_3_yrs_OFC_s8        320     12980 H376_VIII_54  3_yrs   M
321       12980_3_yrs_MFC_s8        321     12980 H376_VIII_54  3_yrs   M
322       12980_3_yrs_M1C_s8        322     12980 H376_VIII_54  3_yrs   M
323       12980_3_yrs_S1C_s8        323     12980 H376_VIII_54  3_yrs   M
324       12980_3_yrs_STC_s8        324     12980 H376_VIII_54  3_yrs   M
325       12980_3_yrs_IPC_s8        325     12980 H376_VIII_54  3_yrs   M
326       12980_3_yrs_A1C_s8        326     12980 H376_VIII_54  3_yrs   M
327       12980_3_yrs_CBC_s8        327     12980 H376_VIII_54  3_yrs   M
328       12980_3_yrs_V1C_s8        328     12980 H376_VIII_54  3_yrs   M
329       12980_3_yrs_AMY_s8        329     12980 H376_VIII_54  3_yrs   M
330       12980_3_yrs_VFC_s8        330     12980 H376_VIII_54  3_yrs   M
331       12980_3_yrs_DFC_s8        331     12980 H376_VIII_54  3_yrs   M
332       12980_3_yrs_HIP_s8        332     12980 H376_VIII_54  3_yrs   M
333       12980_3_yrs_ITC_s8        333     12980 H376_VIII_54  3_yrs   M
334       12298_4_yrs_AMY_s8        334     12298 H376_VIII_50  4_yrs   M
335       12298_4_yrs_STR_s8        335     12298 H376_VIII_50  4_yrs   M
336       12298_4_yrs_VFC_s8        336     12298 H376_VIII_50  4_yrs   M
337       12298_4_yrs_DFC_s8        337     12298 H376_VIII_50  4_yrs   M
338       12298_4_yrs_STC_s8        338     12298 H376_VIII_50  4_yrs   M
339       12298_4_yrs_CBC_s8        339     12298 H376_VIII_50  4_yrs   M
340        12298_4_yrs_MD_s8        340     12298 H376_VIII_50  4_yrs   M
341       12841_8_yrs_ITC_s9        341     12841   H376_IX_51  8_yrs   M
342       12841_8_yrs_S1C_s9        342     12841   H376_IX_51  8_yrs   M
343       12841_8_yrs_IPC_s9        343     12841   H376_IX_51  8_yrs   M
344       12841_8_yrs_V1C_s9        344     12841   H376_IX_51  8_yrs   M
345       12841_8_yrs_STC_s9        345     12841   H376_IX_51  8_yrs   M
346        12841_8_yrs_MD_s9        346     12841   H376_IX_51  8_yrs   M
347       12841_8_yrs_VFC_s9        347     12841   H376_IX_51  8_yrs   M
348       12841_8_yrs_HIP_s9        348     12841   H376_IX_51  8_yrs   M
349       12841_8_yrs_AMY_s9        349     12841   H376_IX_51  8_yrs   M
350       12841_8_yrs_M1C_s9        350     12841   H376_IX_51  8_yrs   M
351       12841_8_yrs_CBC_s9        351     12841   H376_IX_51  8_yrs   M
352       12841_8_yrs_DFC_s9        352     12841   H376_IX_51  8_yrs   M
353       12841_8_yrs_STR_s9        353     12841   H376_IX_51  8_yrs   M
354       12841_8_yrs_A1C_s9        354     12841   H376_IX_51  8_yrs   M
355       12841_8_yrs_MFC_s9        355     12841   H376_IX_51  8_yrs   M
356       12841_8_yrs_OFC_s9        356     12841   H376_IX_51  8_yrs   M
357       12981_8_yrs_MFC_s9        357     12981   H376_IX_52  8_yrs   M
358       12981_8_yrs_CBC_s9        358     12981   H376_IX_52  8_yrs   M
359       12981_8_yrs_A1C_s9        359     12981   H376_IX_52  8_yrs   M
360       12981_8_yrs_VFC_s9        360     12981   H376_IX_52  8_yrs   M
361       12981_8_yrs_HIP_s9        361     12981   H376_IX_52  8_yrs   M
362       12981_8_yrs_AMY_s9        362     12981   H376_IX_52  8_yrs   M
363       12981_8_yrs_V1C_s9        363     12981   H376_IX_52  8_yrs   M
364       12981_8_yrs_IPC_s9        364     12981   H376_IX_52  8_yrs   M
365       12981_8_yrs_DFC_s9        365     12981   H376_IX_52  8_yrs   M
366       12981_8_yrs_STC_s9        366     12981   H376_IX_52  8_yrs   M
367       12981_8_yrs_ITC_s9        367     12981   H376_IX_52  8_yrs   M
368      12289_11_yrs_VFC_s9        368     12289   H376_IX_50 11_yrs   F
369      12289_11_yrs_IPC_s9        369     12289   H376_IX_50 11_yrs   F
370      12289_11_yrs_ITC_s9        370     12289   H376_IX_50 11_yrs   F
371      12289_11_yrs_STC_s9        371     12289   H376_IX_50 11_yrs   F
372      12289_11_yrs_S1C_s9        372     12289   H376_IX_50 11_yrs   F
373      12289_11_yrs_DFC_s9        373     12289   H376_IX_50 11_yrs   F
374      12289_11_yrs_AMY_s9        374     12289   H376_IX_50 11_yrs   F
375      12289_11_yrs_V1C_s9        375     12289   H376_IX_50 11_yrs   F
376      12289_11_yrs_CBC_s9        376     12289   H376_IX_50 11_yrs   F
377      12289_11_yrs_A1C_s9        377     12289   H376_IX_50 11_yrs   F
378      12289_11_yrs_HIP_s9        378     12289   H376_IX_50 11_yrs   F
379      12289_11_yrs_M1C_s9        379     12289   H376_IX_50 11_yrs   F
380      12289_11_yrs_OFC_s9        380     12289   H376_IX_50 11_yrs   F
381      12289_11_yrs_MFC_s9        381     12289   H376_IX_50 11_yrs   F
382     12831_13_yrs_MFC_s10        382     12831    H376_X_51 13_yrs   F
383     12831_13_yrs_IPC_s10        383     12831    H376_X_51 13_yrs   F
384     12831_13_yrs_VFC_s10        384     12831    H376_X_51 13_yrs   F
385     12831_13_yrs_A1C_s10        385     12831    H376_X_51 13_yrs   F
386     12831_13_yrs_ITC_s10        386     12831    H376_X_51 13_yrs   F
387     12831_13_yrs_STC_s10        387     12831    H376_X_51 13_yrs   F
388     12831_13_yrs_CBC_s10        388     12831    H376_X_51 13_yrs   F
389     12831_13_yrs_V1C_s10        389     12831    H376_X_51 13_yrs   F
390     12831_13_yrs_S1C_s10        390     12831    H376_X_51 13_yrs   F
391     12831_13_yrs_DFC_s10        391     12831    H376_X_51 13_yrs   F
392     12831_13_yrs_OFC_s10        392     12831    H376_X_51 13_yrs   F
393      12831_13_yrs_MD_s10        393     12831    H376_X_51 13_yrs   F
394     12831_13_yrs_AMY_s10        394     12831    H376_X_51 13_yrs   F
395     12831_13_yrs_M1C_s10        395     12831    H376_X_51 13_yrs   F
396     12831_13_yrs_HIP_s10        396     12831    H376_X_51 13_yrs   F
397     12831_13_yrs_STR_s10        397     12831    H376_X_51 13_yrs   F
398     12299_15_yrs_IPC_s10        398     12299    H376_X_50 15_yrs   M
399     12299_15_yrs_CBC_s10        399     12299    H376_X_50 15_yrs   M
400     12299_15_yrs_STC_s10        400     12299    H376_X_50 15_yrs   M
401     12299_15_yrs_ITC_s10        401     12299    H376_X_50 15_yrs   M
402     12299_15_yrs_AMY_s10        402     12299    H376_X_50 15_yrs   M
403     12984_18_yrs_HIP_s10        403     12984    H376_X_53 18_yrs   M
404     12984_18_yrs_M1C_s10        404     12984    H376_X_53 18_yrs   M
405     12984_18_yrs_V1C_s10        405     12984    H376_X_53 18_yrs   M
406     12984_18_yrs_A1C_s10        406     12984    H376_X_53 18_yrs   M
407     12984_18_yrs_ITC_s10        407     12984    H376_X_53 18_yrs   M
408     12984_18_yrs_VFC_s10        408     12984    H376_X_53 18_yrs   M
409     12984_18_yrs_MFC_s10        409     12984    H376_X_53 18_yrs   M
410     12984_18_yrs_STC_s10        410     12984    H376_X_53 18_yrs   M
411     12984_18_yrs_DFC_s10        411     12984    H376_X_53 18_yrs   M
412     12984_18_yrs_S1C_s10        412     12984    H376_X_53 18_yrs   M
413     12984_18_yrs_IPC_s10        413     12984    H376_X_53 18_yrs   M
414     12984_18_yrs_OFC_s10        414     12984    H376_X_53 18_yrs   M
415     12984_18_yrs_CBC_s10        415     12984    H376_X_53 18_yrs   M
416     12832_19_yrs_STC_s10        416     12832    H376_X_52 19_yrs   F
417     12832_19_yrs_CBC_s10        417     12832    H376_X_52 19_yrs   F
418     12832_19_yrs_DFC_s10        418     12832    H376_X_52 19_yrs   F
419     12832_19_yrs_AMY_s10        419     12832    H376_X_52 19_yrs   F
420     12832_19_yrs_OFC_s10        420     12832    H376_X_52 19_yrs   F
421     12832_19_yrs_ITC_s10        421     12832    H376_X_52 19_yrs   F
422     12832_19_yrs_STR_s10        422     12832    H376_X_52 19_yrs   F
423     12832_19_yrs_S1C_s10        423     12832    H376_X_52 19_yrs   F
424     12832_19_yrs_M1C_s10        424     12832    H376_X_52 19_yrs   F
425     12832_19_yrs_HIP_s10        425     12832    H376_X_52 19_yrs   F
426     12832_19_yrs_A1C_s10        426     12832    H376_X_52 19_yrs   F
427     12832_19_yrs_V1C_s10        427     12832    H376_X_52 19_yrs   F
428     12832_19_yrs_IPC_s10        428     12832    H376_X_52 19_yrs   F
429     12832_19_yrs_VFC_s10        429     12832    H376_X_52 19_yrs   F
430     12832_19_yrs_MFC_s10        430     12832    H376_X_52 19_yrs   F
431      12832_19_yrs_MD_s10        431     12832    H376_X_52 19_yrs   F
432     13057_21_yrs_MFC_s11        432     13057   H376_XI_60 21_yrs   F
433     13057_21_yrs_M1C_s11        433     13057   H376_XI_60 21_yrs   F
434     13057_21_yrs_A1C_s11        434     13057   H376_XI_60 21_yrs   F
435     13057_21_yrs_DFC_s11        435     13057   H376_XI_60 21_yrs   F
436     13057_21_yrs_AMY_s11        436     13057   H376_XI_60 21_yrs   F
437      13057_21_yrs_MD_s11        437     13057   H376_XI_60 21_yrs   F
438     13057_21_yrs_V1C_s11        438     13057   H376_XI_60 21_yrs   F
439     13057_21_yrs_STC_s11        439     13057   H376_XI_60 21_yrs   F
440     13057_21_yrs_VFC_s11        440     13057   H376_XI_60 21_yrs   F
441     13057_21_yrs_CBC_s11        441     13057   H376_XI_60 21_yrs   F
442     13057_21_yrs_S1C_s11        442     13057   H376_XI_60 21_yrs   F
443     13057_21_yrs_ITC_s11        443     13057   H376_XI_60 21_yrs   F
444     13057_21_yrs_IPC_s11        444     13057   H376_XI_60 21_yrs   F
445     13057_21_yrs_HIP_s11        445     13057   H376_XI_60 21_yrs   F
446     13057_21_yrs_STR_s11        446     13057   H376_XI_60 21_yrs   F
447     13057_21_yrs_OFC_s11        447     13057   H376_XI_60 21_yrs   F
448     12300_23_yrs_ITC_s11        448     12300   H376_XI_50 23_yrs   M
449     12300_23_yrs_AMY_s11        449     12300   H376_XI_50 23_yrs   M
450     12300_23_yrs_OFC_s11        450     12300   H376_XI_50 23_yrs   M
451      12300_23_yrs_MD_s11        451     12300   H376_XI_50 23_yrs   M
452     12300_23_yrs_STC_s11        452     12300   H376_XI_50 23_yrs   M
453     12300_23_yrs_VFC_s11        453     12300   H376_XI_50 23_yrs   M
454     12300_23_yrs_MFC_s11        454     12300   H376_XI_50 23_yrs   M
455     12300_23_yrs_M1C_s11        455     12300   H376_XI_50 23_yrs   M
456     12300_23_yrs_HIP_s11        456     12300   H376_XI_50 23_yrs   M
457     12300_23_yrs_CBC_s11        457     12300   H376_XI_50 23_yrs   M
458     12300_23_yrs_S1C_s11        458     12300   H376_XI_50 23_yrs   M
459     12300_23_yrs_A1C_s11        459     12300   H376_XI_50 23_yrs   M
460     12300_23_yrs_IPC_s11        460     12300   H376_XI_50 23_yrs   M
461     12300_23_yrs_STR_s11        461     12300   H376_XI_50 23_yrs   M
462     12290_30_yrs_ITC_s12        462     12290   H376_XI_52 30_yrs   F
463     12290_30_yrs_STR_s12        463     12290   H376_XI_52 30_yrs   F
464     12290_30_yrs_MFC_s12        464     12290   H376_XI_52 30_yrs   F
465     12290_30_yrs_OFC_s12        465     12290   H376_XI_52 30_yrs   F
466     12290_30_yrs_IPC_s12        466     12290   H376_XI_52 30_yrs   F
467     12290_30_yrs_STC_s12        467     12290   H376_XI_52 30_yrs   F
468     12290_30_yrs_S1C_s12        468     12290   H376_XI_52 30_yrs   F
469      12290_30_yrs_MD_s12        469     12290   H376_XI_52 30_yrs   F
470     12290_30_yrs_HIP_s12        470     12290   H376_XI_52 30_yrs   F
471     12290_30_yrs_A1C_s12        471     12290   H376_XI_52 30_yrs   F
472     12290_30_yrs_V1C_s12        472     12290   H376_XI_52 30_yrs   F
473     12290_30_yrs_DFC_s12        473     12290   H376_XI_52 30_yrs   F
474     12290_30_yrs_AMY_s12        474     12290   H376_XI_52 30_yrs   F
475     12290_30_yrs_M1C_s12        475     12290   H376_XI_52 30_yrs   F
476     12290_30_yrs_VFC_s12        476     12290   H376_XI_52 30_yrs   F
477     12290_30_yrs_CBC_s12        477     12290   H376_XI_52 30_yrs   F
478     12302_36_yrs_M1C_s12        478     12302   H376_XI_53 36_yrs   M
479     12302_36_yrs_STC_s12        479     12302   H376_XI_53 36_yrs   M
480     12302_36_yrs_MFC_s12        480     12302   H376_XI_53 36_yrs   M
481     12302_36_yrs_ITC_s12        481     12302   H376_XI_53 36_yrs   M
482     12302_36_yrs_IPC_s12        482     12302   H376_XI_53 36_yrs   M
483     12302_36_yrs_AMY_s12        483     12302   H376_XI_53 36_yrs   M
484     12302_36_yrs_OFC_s12        484     12302   H376_XI_53 36_yrs   M
485     12302_36_yrs_VFC_s12        485     12302   H376_XI_53 36_yrs   M
486     12302_36_yrs_DFC_s12        486     12302   H376_XI_53 36_yrs   M
487     12302_36_yrs_A1C_s12        487     12302   H376_XI_53 36_yrs   M
488     12302_36_yrs_V1C_s12        488     12302   H376_XI_53 36_yrs   M
489     12302_36_yrs_CBC_s12        489     12302   H376_XI_53 36_yrs   M
490     12302_36_yrs_S1C_s12        490     12302   H376_XI_53 36_yrs   M
491     12302_36_yrs_HIP_s12        491     12302   H376_XI_53 36_yrs   M
492     12302_36_yrs_STR_s12        492     12302   H376_XI_53 36_yrs   M
493      12302_36_yrs_MD_s12        493     12302   H376_XI_53 36_yrs   M
494     12303_37_yrs_S1C_s12        494     12303   H376_XI_54 37_yrs   M
495     12303_37_yrs_V1C_s12        495     12303   H376_XI_54 37_yrs   M
496     12303_37_yrs_CBC_s12        496     12303   H376_XI_54 37_yrs   M
497     12303_37_yrs_HIP_s12        497     12303   H376_XI_54 37_yrs   M
498     12303_37_yrs_IPC_s12        498     12303   H376_XI_54 37_yrs   M
499      12303_37_yrs_MD_s12        499     12303   H376_XI_54 37_yrs   M
500     12303_37_yrs_DFC_s12        500     12303   H376_XI_54 37_yrs   M
501     12303_37_yrs_VFC_s12        501     12303   H376_XI_54 37_yrs   M
502     12303_37_yrs_ITC_s12        502     12303   H376_XI_54 37_yrs   M
503     12303_37_yrs_A1C_s12        503     12303   H376_XI_54 37_yrs   M
504     12303_37_yrs_M1C_s12        504     12303   H376_XI_54 37_yrs   M
505     12303_37_yrs_OFC_s12        505     12303   H376_XI_54 37_yrs   M
506     12303_37_yrs_STR_s12        506     12303   H376_XI_54 37_yrs   M
507     12303_37_yrs_STC_s12        507     12303   H376_XI_54 37_yrs   M
508     12303_37_yrs_AMY_s12        508     12303   H376_XI_54 37_yrs   M
509     12303_37_yrs_MFC_s12        509     12303   H376_XI_54 37_yrs   M
510     12304_40_yrs_DFC_s13        510     12304   H376_XI_56 40_yrs   F
511     12304_40_yrs_ITC_s13        511     12304   H376_XI_56 40_yrs   F
512     12304_40_yrs_VFC_s13        512     12304   H376_XI_56 40_yrs   F
513      12304_40_yrs_MD_s13        513     12304   H376_XI_56 40_yrs   F
514     12304_40_yrs_AMY_s13        514     12304   H376_XI_56 40_yrs   F
515     12304_40_yrs_A1C_s13        515     12304   H376_XI_56 40_yrs   F
516     12304_40_yrs_CBC_s13        516     12304   H376_XI_56 40_yrs   F
517     12304_40_yrs_V1C_s13        517     12304   H376_XI_56 40_yrs   F
518     12304_40_yrs_OFC_s13        518     12304   H376_XI_56 40_yrs   F
519     12304_40_yrs_STC_s13        519     12304   H376_XI_56 40_yrs   F
520     12304_40_yrs_IPC_s13        520     12304   H376_XI_56 40_yrs   F
521     12304_40_yrs_M1C_s13        521     12304   H376_XI_56 40_yrs   F
522     12304_40_yrs_HIP_s13        522     12304   H376_XI_56 40_yrs   F
523     12304_40_yrs_STR_s13        523     12304   H376_XI_56 40_yrs   F
524     12304_40_yrs_S1C_s13        524     12304   H376_XI_56 40_yrs   F
    StructureID StructureAcronym
1         10268              Ocx
2         10291          M1C-S1C
3         10361              AMY
4         10550              MGE
5         10243              STC
6         10665              URL
7         10552              CGE
8         10391              DTH
9         10278              ACC
10        10173            DLPFC
11        10194              OFC
12        10551              LGE
13        10252              ITC
14        10294              HIP
15        10185              VFC
16        10208              PCx
17        10173            DLPFC
18        10278              ACC
19        10361              AMY
20        10391              DTH
21        10665              URL
22        10551              LGE
23        10291          M1C-S1C
24        10550              MGE
25        10235              TCx
26        10294              HIP
27        10268              Ocx
28        10552              CGE
29        10194              OFC
30        10208              PCx
31        10294              HIP
32        10391              DTH
33        10361              AMY
34        10236              A1C
35        10269              V1C
36        10278              ACC
37        10333              STR
38        10163              M1C
39        10173            DLPFC
40        10252              ITC
41        10185              VFC
42        10243              STC
43        10225              IPC
44        10194              OFC
45        10209              S1C
46        10243              STC
47        10269              V1C
48        10236              A1C
49        10656               CB
50        10252              ITC
51        10225              IPC
52        10209              S1C
53        10391              DTH
54        10294              HIP
55        10173            DLPFC
56        10194              OFC
57        10163              M1C
58        10185              VFC
59        10361              AMY
60        10333              STR
61        10361              AMY
62        10163              M1C
63        10252              ITC
64        10185              VFC
65        10333              STR
66        10657              CBC
67        10391              DTH
68        10173            DLPFC
69        10194              OFC
70        10209              S1C
71        10269              V1C
72        10278              ACC
73        10294              HIP
74        10225              IPC
75        10236              A1C
76        10333              STR
77        10163              M1C
78        10361              AMY
79        10209              S1C
80        10269              V1C
81        10236              A1C
82        10294              HIP
83        10185              VFC
84        10278              ACC
85        10243              STC
86        10194              OFC
87        10225              IPC
88        10173            DLPFC
89        10252              ITC
90        10333              STR
91        10209              S1C
92        10269              V1C
93        10361              AMY
94        10225              IPC
95        10656               CB
96        10173            DLPFC
97        10194              OFC
98        10243              STC
99        10236              A1C
100       10294              HIP
101       10163              M1C
102       10252              ITC
103       10398               MD
104       10278              ACC
105       10185              VFC
106       10209              S1C
107       10173            DLPFC
108       10656               CB
109       10361              AMY
110       10252              ITC
111       10294              HIP
112       10225              IPC
113       10236              A1C
114       10185              VFC
115       10333              STR
116       10194              OFC
117       10278              ACC
118       10269              V1C
119       10163              M1C
120       10185              VFC
121       10194              OFC
122       10243              STC
123       10173            DLPFC
124       10225              IPC
125       10236              A1C
126       10278              ACC
127       10333              STR
128       10398               MD
129       10269              V1C
130       10185              VFC
131       10243              STC
132       10225              IPC
133       10236              A1C
134       10398               MD
135       10361              AMY
136       10269              V1C
137       10252              ITC
138       10657              CBC
139       10294              HIP
140       10333              STR
141       10194              OFC
142       10173            DLPFC
143       10163              M1C
144       10278              ACC
145       10209              S1C
146       10294              HIP
147       10252              ITC
148       10173            DLPFC
149       10225              IPC
150       10243              STC
151       10269              V1C
152       10398               MD
153       10333              STR
154       10291          M1C-S1C
155       10236              A1C
156       10185              VFC
157       10361              AMY
158       10278              ACC
159       10333              STR
160       10243              STC
161       10398               MD
162       10236              A1C
163       10294              HIP
164       10173            DLPFC
165       10185              VFC
166       10225              IPC
167       10291          M1C-S1C
168       10269              V1C
169       10657              CBC
170       10194              OFC
171       10361              AMY
172       10278              ACC
173       10243              STC
174       10225              IPC
175       10291          M1C-S1C
176       10278              ACC
177       10269              V1C
178       10294              HIP
179       10236              A1C
180       10398               MD
181       10185              VFC
182       10333              STR
183       10173            DLPFC
184       10657              CBC
185       10252              ITC
186       10278              ACC
187       10163              M1C
188       10333              STR
189       10294              HIP
190       10243              STC
191       10252              ITC
192       10361              AMY
193       10185              VFC
194       10194              OFC
195       10269              V1C
196       10209              S1C
197       10657              CBC
198       10225              IPC
199       10173            DLPFC
200       10294              HIP
201       10361              AMY
202       10173            DLPFC
203       10209              S1C
204       10398               MD
205       10333              STR
206       10236              A1C
207       10225              IPC
208       10194              OFC
209       10243              STC
210       10252              ITC
211       10185              VFC
212       10163              M1C
213       10278              ACC
214       10657              CBC
215       10269              V1C
216       10236              A1C
217       10243              STC
218       10269              V1C
219       10173            DLPFC
220       10657              CBC
221       10185              VFC
222       10236              A1C
223       10194              OFC
224       10361              AMY
225       10269              V1C
226       10278              ACC
227       10398               MD
228       10657              CBC
229       10333              STR
230       10225              IPC
231       10252              ITC
232       10209              S1C
233       10173            DLPFC
234       10243              STC
235       10163              M1C
236       10185              VFC
237       10294              HIP
238       10243              STC
239       10333              STR
240       10269              V1C
241       10657              CBC
242       10294              HIP
243       10398               MD
244       10252              ITC
245       10361              AMY
246       10278              ACC
247       10163              M1C
248       10173            DLPFC
249       10194              OFC
250       10236              A1C
251       10243              STC
252       10185              VFC
253       10252              ITC
254       10361              AMY
255       10163              M1C
256       10398               MD
257       10194              OFC
258       10333              STR
259       10243              STC
260       10236              A1C
261       10294              HIP
262       10361              AMY
263       10278              ACC
264       10269              V1C
265       10252              ITC
266       10209              S1C
267       10225              IPC
268       10657              CBC
269       10173            DLPFC
270       10185              VFC
271       10209              S1C
272       10225              IPC
273       10243              STC
274       10173            DLPFC
275       10194              OFC
276       10278              ACC
277       10657              CBC
278       10252              ITC
279       10398               MD
280       10269              V1C
281       10361              AMY
282       10163              M1C
283       10173            DLPFC
284       10243              STC
285       10269              V1C
286       10278              ACC
287       10194              OFC
288       10252              ITC
289       10209              S1C
290       10185              VFC
291       10657              CBC
292       10236              A1C
293       10398               MD
294       10294              HIP
295       10225              IPC
296       10333              STR
297       10185              VFC
298       10225              IPC
299       10209              S1C
300       10252              ITC
301       10398               MD
302       10173            DLPFC
303       10278              ACC
304       10657              CBC
305       10294              HIP
306       10194              OFC
307       10269              V1C
308       10243              STC
309       10333              STR
310       10243              STC
311       10225              IPC
312       10252              ITC
313       10657              CBC
314       10361              AMY
315       10185              VFC
316       10163              M1C
317       10236              A1C
318       10398               MD
319       10269              V1C
320       10194              OFC
321       10278              ACC
322       10163              M1C
323       10209              S1C
324       10243              STC
325       10225              IPC
326       10236              A1C
327       10657              CBC
328       10269              V1C
329       10361              AMY
330       10185              VFC
331       10173            DLPFC
332       10294              HIP
333       10252              ITC
334       10361              AMY
335       10333              STR
336       10185              VFC
337       10173            DLPFC
338       10243              STC
339       10657              CBC
340       10398               MD
341       10252              ITC
342       10209              S1C
343       10225              IPC
344       10269              V1C
345       10243              STC
346       10398               MD
347       10185              VFC
348       10294              HIP
349       10361              AMY
350       10163              M1C
351       10657              CBC
352       10173            DLPFC
353       10333              STR
354       10236              A1C
355       10278              ACC
356       10194              OFC
357       10278              ACC
358       10657              CBC
359       10236              A1C
360       10185              VFC
361       10294              HIP
362       10361              AMY
363       10269              V1C
364       10225              IPC
365       10173            DLPFC
366       10243              STC
367       10252              ITC
368       10185              VFC
369       10225              IPC
370       10252              ITC
371       10243              STC
372       10209              S1C
373       10173            DLPFC
374       10361              AMY
375       10269              V1C
376       10657              CBC
377       10236              A1C
378       10294              HIP
379       10163              M1C
380       10194              OFC
381       10278              ACC
382       10278              ACC
383       10225              IPC
384       10185              VFC
385       10236              A1C
386       10252              ITC
387       10243              STC
388       10657              CBC
389       10269              V1C
390       10209              S1C
391       10173            DLPFC
392       10194              OFC
393       10398               MD
394       10361              AMY
395       10163              M1C
396       10294              HIP
397       10333              STR
398       10225              IPC
399       10657              CBC
400       10243              STC
401       10252              ITC
402       10361              AMY
403       10294              HIP
404       10163              M1C
405       10269              V1C
406       10236              A1C
407       10252              ITC
408       10185              VFC
409       10278              ACC
410       10243              STC
411       10173            DLPFC
412       10209              S1C
413       10225              IPC
414       10194              OFC
415       10657              CBC
416       10243              STC
417       10657              CBC
418       10173            DLPFC
419       10361              AMY
420       10194              OFC
421       10252              ITC
422       10333              STR
423       10209              S1C
424       10163              M1C
425       10294              HIP
426       10236              A1C
427       10269              V1C
428       10225              IPC
429       10185              VFC
430       10278              ACC
431       10398               MD
432       10278              ACC
433       10163              M1C
434       10236              A1C
435       10173            DLPFC
436       10361              AMY
437       10398               MD
438       10269              V1C
439       10243              STC
440       10185              VFC
441       10657              CBC
442       10209              S1C
443       10252              ITC
444       10225              IPC
445       10294              HIP
446       10333              STR
447       10194              OFC
448       10252              ITC
449       10361              AMY
450       10194              OFC
451       10398               MD
452       10243              STC
453       10185              VFC
454       10278              ACC
455       10163              M1C
456       10294              HIP
457       10657              CBC
458       10209              S1C
459       10236              A1C
460       10225              IPC
461       10333              STR
462       10252              ITC
463       10333              STR
464       10278              ACC
465       10194              OFC
466       10225              IPC
467       10243              STC
468       10209              S1C
469       10398               MD
470       10294              HIP
471       10236              A1C
472       10269              V1C
473       10173            DLPFC
474       10361              AMY
475       10163              M1C
476       10185              VFC
477       10657              CBC
478       10163              M1C
479       10243              STC
480       10278              ACC
481       10252              ITC
482       10225              IPC
483       10361              AMY
484       10194              OFC
485       10185              VFC
486       10173            DLPFC
487       10236              A1C
488       10269              V1C
489       10657              CBC
490       10209              S1C
491       10294              HIP
492       10333              STR
493       10398               MD
494       10209              S1C
495       10269              V1C
496       10657              CBC
497       10294              HIP
498       10225              IPC
499       10398               MD
500       10173            DLPFC
501       10185              VFC
502       10252              ITC
503       10236              A1C
504       10163              M1C
505       10194              OFC
506       10333              STR
507       10243              STC
508       10361              AMY
509       10278              ACC
510       10173            DLPFC
511       10252              ITC
512       10185              VFC
513       10398               MD
514       10361              AMY
515       10236              A1C
516       10657              CBC
517       10269              V1C
518       10194              OFC
519       10243              STC
520       10225              IPC
521       10163              M1C
522       10294              HIP
523       10333              STR
524       10209              S1C
                                                  Structure Stage AgeInterval
1                                       occipital neocortex   s2a      8-9pcw
2                    primary motor-sensory cortex (samples)   s2a      8-9pcw
3                                        amygdaloid complex   s2a      8-9pcw
4                                medial ganglionic eminence   s2a      8-9pcw
5    posterior (caudal) superior temporal cortex (area 22c)   s2a      8-9pcw
6                               upper (rostral) rhombic lip   s2a      8-9pcw
7                                caudal ganglionic eminence   s2a      8-9pcw
8                                           dorsal thalamus   s2a      8-9pcw
9   anterior (rostral) cingulate (medial prefrontal) cortex   s2a      8-9pcw
10                           dorsolateral prefrontal cortex   s2a      8-9pcw
11                                   orbital frontal cortex   s2a      8-9pcw
12                              lateral ganglionic eminence   s2a      8-9pcw
13        inferolateral temporal cortex (area TEv, area 20)   s2a      8-9pcw
14                      hippocampus (hippocampal formation)   s2a      8-9pcw
15                          ventrolateral prefrontal cortex   s2a      8-9pcw
16                                       parietal neocortex   s2a      8-9pcw
17                           dorsolateral prefrontal cortex   s2a      8-9pcw
18  anterior (rostral) cingulate (medial prefrontal) cortex   s2a      8-9pcw
19                                       amygdaloid complex   s2a      8-9pcw
20                                          dorsal thalamus   s2a      8-9pcw
21                              upper (rostral) rhombic lip   s2a      8-9pcw
22                              lateral ganglionic eminence   s2a      8-9pcw
23                   primary motor-sensory cortex (samples)   s2a      8-9pcw
24                               medial ganglionic eminence   s2a      8-9pcw
25                                       temporal neocortex   s2a      8-9pcw
26                      hippocampus (hippocampal formation)   s2a      8-9pcw
27                                      occipital neocortex   s2a      8-9pcw
28                               caudal ganglionic eminence   s2a      8-9pcw
29                                   orbital frontal cortex   s2a      8-9pcw
30                                       parietal neocortex   s2a      8-9pcw
31                      hippocampus (hippocampal formation)   s2b    10-12pcw
32                                          dorsal thalamus   s2b    10-12pcw
33                                       amygdaloid complex   s2b    10-12pcw
34                           primary auditory cortex (core)   s2b    10-12pcw
35       primary visual cortex (striate cortex, area V1/17)   s2b    10-12pcw
36  anterior (rostral) cingulate (medial prefrontal) cortex   s2b    10-12pcw
37                                                 striatum   s2b    10-12pcw
38                   primary motor cortex (area M1, area 4)   s2b    10-12pcw
39                           dorsolateral prefrontal cortex   s2b    10-12pcw
40        inferolateral temporal cortex (area TEv, area 20)   s2b    10-12pcw
41                          ventrolateral prefrontal cortex   s2b    10-12pcw
42   posterior (caudal) superior temporal cortex (area 22c)   s2b    10-12pcw
43                posteroventral (inferior) parietal cortex   s2b    10-12pcw
44                                   orbital frontal cortex   s2b    10-12pcw
45      primary somatosensory cortex (area S1, areas 3,1,2)   s2b    10-12pcw
46   posterior (caudal) superior temporal cortex (area 22c)   s2b    10-12pcw
47       primary visual cortex (striate cortex, area V1/17)   s2b    10-12pcw
48                           primary auditory cortex (core)   s2b    10-12pcw
49                                               cerebellum   s2b    10-12pcw
50        inferolateral temporal cortex (area TEv, area 20)   s2b    10-12pcw
51                posteroventral (inferior) parietal cortex   s2b    10-12pcw
52      primary somatosensory cortex (area S1, areas 3,1,2)   s2b    10-12pcw
53                                          dorsal thalamus   s2b    10-12pcw
54                      hippocampus (hippocampal formation)   s2b    10-12pcw
55                           dorsolateral prefrontal cortex   s2b    10-12pcw
56                                   orbital frontal cortex   s2b    10-12pcw
57                   primary motor cortex (area M1, area 4)   s2b    10-12pcw
58                          ventrolateral prefrontal cortex   s2b    10-12pcw
59                                       amygdaloid complex   s2b    10-12pcw
60                                                 striatum   s2b    10-12pcw
61                                       amygdaloid complex   s2b    10-12pcw
62                   primary motor cortex (area M1, area 4)   s2b    10-12pcw
63        inferolateral temporal cortex (area TEv, area 20)   s2b    10-12pcw
64                          ventrolateral prefrontal cortex   s2b    10-12pcw
65                                                 striatum   s2b    10-12pcw
66                                        cerebellar cortex   s2b    10-12pcw
67                                          dorsal thalamus   s2b    10-12pcw
68                           dorsolateral prefrontal cortex   s2b    10-12pcw
69                                   orbital frontal cortex   s2b    10-12pcw
70      primary somatosensory cortex (area S1, areas 3,1,2)   s2b    10-12pcw
71       primary visual cortex (striate cortex, area V1/17)   s2b    10-12pcw
72  anterior (rostral) cingulate (medial prefrontal) cortex   s2b    10-12pcw
73                      hippocampus (hippocampal formation)   s2b    10-12pcw
74                posteroventral (inferior) parietal cortex   s2b    10-12pcw
75                           primary auditory cortex (core)   s2b    10-12pcw
76                                                 striatum   s3a    13-15pcw
77                   primary motor cortex (area M1, area 4)   s3a    13-15pcw
78                                       amygdaloid complex   s3a    13-15pcw
79      primary somatosensory cortex (area S1, areas 3,1,2)   s3a    13-15pcw
80       primary visual cortex (striate cortex, area V1/17)   s3a    13-15pcw
81                           primary auditory cortex (core)   s3a    13-15pcw
82                      hippocampus (hippocampal formation)   s3a    13-15pcw
83                          ventrolateral prefrontal cortex   s3a    13-15pcw
84  anterior (rostral) cingulate (medial prefrontal) cortex   s3a    13-15pcw
85   posterior (caudal) superior temporal cortex (area 22c)   s3a    13-15pcw
86                                   orbital frontal cortex   s3a    13-15pcw
87                posteroventral (inferior) parietal cortex   s3a    13-15pcw
88                           dorsolateral prefrontal cortex   s3a    13-15pcw
89        inferolateral temporal cortex (area TEv, area 20)   s3a    13-15pcw
90                                                 striatum   s3a    13-15pcw
91      primary somatosensory cortex (area S1, areas 3,1,2)   s3a    13-15pcw
92       primary visual cortex (striate cortex, area V1/17)   s3a    13-15pcw
93                                       amygdaloid complex   s3a    13-15pcw
94                posteroventral (inferior) parietal cortex   s3a    13-15pcw
95                                               cerebellum   s3a    13-15pcw
96                           dorsolateral prefrontal cortex   s3a    13-15pcw
97                                   orbital frontal cortex   s3a    13-15pcw
98   posterior (caudal) superior temporal cortex (area 22c)   s3a    13-15pcw
99                           primary auditory cortex (core)   s3a    13-15pcw
100                     hippocampus (hippocampal formation)   s3a    13-15pcw
101                  primary motor cortex (area M1, area 4)   s3a    13-15pcw
102       inferolateral temporal cortex (area TEv, area 20)   s3a    13-15pcw
103                         mediodorsal nucleus of thalamus   s3a    13-15pcw
104 anterior (rostral) cingulate (medial prefrontal) cortex   s3a    13-15pcw
105                         ventrolateral prefrontal cortex   s3a    13-15pcw
106     primary somatosensory cortex (area S1, areas 3,1,2)   s3a    13-15pcw
107                          dorsolateral prefrontal cortex   s3a    13-15pcw
108                                              cerebellum   s3a    13-15pcw
109                                      amygdaloid complex   s3a    13-15pcw
110       inferolateral temporal cortex (area TEv, area 20)   s3a    13-15pcw
111                     hippocampus (hippocampal formation)   s3a    13-15pcw
112               posteroventral (inferior) parietal cortex   s3a    13-15pcw
113                          primary auditory cortex (core)   s3a    13-15pcw
114                         ventrolateral prefrontal cortex   s3a    13-15pcw
115                                                striatum   s3a    13-15pcw
116                                  orbital frontal cortex   s3a    13-15pcw
117 anterior (rostral) cingulate (medial prefrontal) cortex   s3a    13-15pcw
118      primary visual cortex (striate cortex, area V1/17)   s3a    13-15pcw
119                  primary motor cortex (area M1, area 4)   s3a    13-15pcw
120                         ventrolateral prefrontal cortex   s3b    16-18pcw
121                                  orbital frontal cortex   s3b    16-18pcw
122  posterior (caudal) superior temporal cortex (area 22c)   s3b    16-18pcw
123                          dorsolateral prefrontal cortex   s3b    16-18pcw
124               posteroventral (inferior) parietal cortex   s3b    16-18pcw
125                          primary auditory cortex (core)   s3b    16-18pcw
126 anterior (rostral) cingulate (medial prefrontal) cortex   s3b    16-18pcw
127                                                striatum   s3b    16-18pcw
128                         mediodorsal nucleus of thalamus   s3b    16-18pcw
129      primary visual cortex (striate cortex, area V1/17)   s3b    16-18pcw
130                         ventrolateral prefrontal cortex   s3b    16-18pcw
131  posterior (caudal) superior temporal cortex (area 22c)   s3b    16-18pcw
132               posteroventral (inferior) parietal cortex   s3b    16-18pcw
133                          primary auditory cortex (core)   s3b    16-18pcw
134                         mediodorsal nucleus of thalamus   s3b    16-18pcw
135                                      amygdaloid complex   s3b    16-18pcw
136      primary visual cortex (striate cortex, area V1/17)   s3b    16-18pcw
137       inferolateral temporal cortex (area TEv, area 20)   s3b    16-18pcw
138                                       cerebellar cortex   s3b    16-18pcw
139                     hippocampus (hippocampal formation)   s3b    16-18pcw
140                                                striatum   s3b    16-18pcw
141                                  orbital frontal cortex   s3b    16-18pcw
142                          dorsolateral prefrontal cortex   s3b    16-18pcw
143                  primary motor cortex (area M1, area 4)   s3b    16-18pcw
144 anterior (rostral) cingulate (medial prefrontal) cortex   s3b    16-18pcw
145     primary somatosensory cortex (area S1, areas 3,1,2)   s3b    16-18pcw
146                     hippocampus (hippocampal formation)   s3b    16-18pcw
147       inferolateral temporal cortex (area TEv, area 20)   s3b    16-18pcw
148                          dorsolateral prefrontal cortex   s3b    16-18pcw
149               posteroventral (inferior) parietal cortex   s3b    16-18pcw
150  posterior (caudal) superior temporal cortex (area 22c)   s3b    16-18pcw
151      primary visual cortex (striate cortex, area V1/17)   s3b    16-18pcw
152                         mediodorsal nucleus of thalamus   s3b    16-18pcw
153                                                striatum   s3b    16-18pcw
154                  primary motor-sensory cortex (samples)   s3b    16-18pcw
155                          primary auditory cortex (core)   s3b    16-18pcw
156                         ventrolateral prefrontal cortex   s3b    16-18pcw
157                                      amygdaloid complex   s3b    16-18pcw
158 anterior (rostral) cingulate (medial prefrontal) cortex   s3b    16-18pcw
159                                                striatum   s3b    16-18pcw
160  posterior (caudal) superior temporal cortex (area 22c)   s3b    16-18pcw
161                         mediodorsal nucleus of thalamus   s3b    16-18pcw
162                          primary auditory cortex (core)   s3b    16-18pcw
163                     hippocampus (hippocampal formation)   s3b    16-18pcw
164                          dorsolateral prefrontal cortex   s3b    16-18pcw
165                         ventrolateral prefrontal cortex   s3b    16-18pcw
166               posteroventral (inferior) parietal cortex   s3b    16-18pcw
167                  primary motor-sensory cortex (samples)   s3b    16-18pcw
168      primary visual cortex (striate cortex, area V1/17)   s3b    16-18pcw
169                                       cerebellar cortex   s3b    16-18pcw
170                                  orbital frontal cortex   s3b    16-18pcw
171                                      amygdaloid complex   s3b    16-18pcw
172 anterior (rostral) cingulate (medial prefrontal) cortex   s3b    16-18pcw
173  posterior (caudal) superior temporal cortex (area 22c)    s4    19-24pcw
174               posteroventral (inferior) parietal cortex    s4    19-24pcw
175                  primary motor-sensory cortex (samples)    s4    19-24pcw
176 anterior (rostral) cingulate (medial prefrontal) cortex    s4    19-24pcw
177      primary visual cortex (striate cortex, area V1/17)    s4    19-24pcw
178                     hippocampus (hippocampal formation)    s4    19-24pcw
179                          primary auditory cortex (core)    s4    19-24pcw
180                         mediodorsal nucleus of thalamus    s4    19-24pcw
181                         ventrolateral prefrontal cortex    s4    19-24pcw
182                                                striatum    s4    19-24pcw
183                          dorsolateral prefrontal cortex    s4    19-24pcw
184                                       cerebellar cortex    s4    19-24pcw
185       inferolateral temporal cortex (area TEv, area 20)    s4    19-24pcw
186 anterior (rostral) cingulate (medial prefrontal) cortex    s4    19-24pcw
187                  primary motor cortex (area M1, area 4)    s4    19-24pcw
188                                                striatum    s4    19-24pcw
189                     hippocampus (hippocampal formation)    s4    19-24pcw
190  posterior (caudal) superior temporal cortex (area 22c)    s4    19-24pcw
191       inferolateral temporal cortex (area TEv, area 20)    s4    19-24pcw
192                                      amygdaloid complex    s4    19-24pcw
193                         ventrolateral prefrontal cortex    s4    19-24pcw
194                                  orbital frontal cortex    s4    19-24pcw
195      primary visual cortex (striate cortex, area V1/17)    s4    19-24pcw
196     primary somatosensory cortex (area S1, areas 3,1,2)    s4    19-24pcw
197                                       cerebellar cortex    s4    19-24pcw
198               posteroventral (inferior) parietal cortex    s4    19-24pcw
199                          dorsolateral prefrontal cortex    s4    19-24pcw
200                     hippocampus (hippocampal formation)    s4    19-24pcw
201                                      amygdaloid complex    s4    19-24pcw
202                          dorsolateral prefrontal cortex    s4    19-24pcw
203     primary somatosensory cortex (area S1, areas 3,1,2)    s4    19-24pcw
204                         mediodorsal nucleus of thalamus    s4    19-24pcw
205                                                striatum    s4    19-24pcw
206                          primary auditory cortex (core)    s4    19-24pcw
207               posteroventral (inferior) parietal cortex    s4    19-24pcw
208                                  orbital frontal cortex    s4    19-24pcw
209  posterior (caudal) superior temporal cortex (area 22c)    s4    19-24pcw
210       inferolateral temporal cortex (area TEv, area 20)    s4    19-24pcw
211                         ventrolateral prefrontal cortex    s4    19-24pcw
212                  primary motor cortex (area M1, area 4)    s4    19-24pcw
213 anterior (rostral) cingulate (medial prefrontal) cortex    s4    19-24pcw
214                                       cerebellar cortex    s4    19-24pcw
215      primary visual cortex (striate cortex, area V1/17)    s4    19-24pcw
216                          primary auditory cortex (core)    s5    25-38pcw
217  posterior (caudal) superior temporal cortex (area 22c)    s5    25-38pcw
218      primary visual cortex (striate cortex, area V1/17)    s5    25-38pcw
219                          dorsolateral prefrontal cortex    s5    25-38pcw
220                                       cerebellar cortex    s5    25-38pcw
221                         ventrolateral prefrontal cortex    s5    25-38pcw
222                          primary auditory cortex (core)    s5    25-38pcw
223                                  orbital frontal cortex    s5    25-38pcw
224                                      amygdaloid complex    s5    25-38pcw
225      primary visual cortex (striate cortex, area V1/17)    s5    25-38pcw
226 anterior (rostral) cingulate (medial prefrontal) cortex    s5    25-38pcw
227                         mediodorsal nucleus of thalamus    s5    25-38pcw
228                                       cerebellar cortex    s5    25-38pcw
229                                                striatum    s5    25-38pcw
230               posteroventral (inferior) parietal cortex    s5    25-38pcw
231       inferolateral temporal cortex (area TEv, area 20)    s5    25-38pcw
232     primary somatosensory cortex (area S1, areas 3,1,2)    s5    25-38pcw
233                          dorsolateral prefrontal cortex    s5    25-38pcw
234  posterior (caudal) superior temporal cortex (area 22c)    s5    25-38pcw
235                  primary motor cortex (area M1, area 4)    s5    25-38pcw
236                         ventrolateral prefrontal cortex    s5    25-38pcw
237                     hippocampus (hippocampal formation)    s5    25-38pcw
238  posterior (caudal) superior temporal cortex (area 22c)    s6      0-5mos
239                                                striatum    s6      0-5mos
240      primary visual cortex (striate cortex, area V1/17)    s6      0-5mos
241                                       cerebellar cortex    s6      0-5mos
242                     hippocampus (hippocampal formation)    s6      0-5mos
243                         mediodorsal nucleus of thalamus    s6      0-5mos
244       inferolateral temporal cortex (area TEv, area 20)    s6      0-5mos
245                                      amygdaloid complex    s6      0-5mos
246 anterior (rostral) cingulate (medial prefrontal) cortex    s6      0-5mos
247                  primary motor cortex (area M1, area 4)    s6      0-5mos
248                          dorsolateral prefrontal cortex    s6      0-5mos
249                                  orbital frontal cortex    s6      0-5mos
250                          primary auditory cortex (core)    s6      0-5mos
251  posterior (caudal) superior temporal cortex (area 22c)    s6      0-5mos
252                         ventrolateral prefrontal cortex    s6      0-5mos
253       inferolateral temporal cortex (area TEv, area 20)    s6      0-5mos
254                                      amygdaloid complex    s6      0-5mos
255                  primary motor cortex (area M1, area 4)    s6      0-5mos
256                         mediodorsal nucleus of thalamus    s6      0-5mos
257                                  orbital frontal cortex    s6      0-5mos
258                                                striatum    s6      0-5mos
259  posterior (caudal) superior temporal cortex (area 22c)    s6      0-5mos
260                          primary auditory cortex (core)    s6      0-5mos
261                     hippocampus (hippocampal formation)    s6      0-5mos
262                                      amygdaloid complex    s6      0-5mos
263 anterior (rostral) cingulate (medial prefrontal) cortex    s6      0-5mos
264      primary visual cortex (striate cortex, area V1/17)    s6      0-5mos
265       inferolateral temporal cortex (area TEv, area 20)    s6      0-5mos
266     primary somatosensory cortex (area S1, areas 3,1,2)    s6      0-5mos
267               posteroventral (inferior) parietal cortex    s6      0-5mos
268                                       cerebellar cortex    s6      0-5mos
269                          dorsolateral prefrontal cortex    s6      0-5mos
270                         ventrolateral prefrontal cortex    s6      0-5mos
271     primary somatosensory cortex (area S1, areas 3,1,2)    s7     6-18mos
272               posteroventral (inferior) parietal cortex    s7     6-18mos
273  posterior (caudal) superior temporal cortex (area 22c)    s7     6-18mos
274                          dorsolateral prefrontal cortex    s7     6-18mos
275                                  orbital frontal cortex    s7     6-18mos
276 anterior (rostral) cingulate (medial prefrontal) cortex    s7     6-18mos
277                                       cerebellar cortex    s7     6-18mos
278       inferolateral temporal cortex (area TEv, area 20)    s7     6-18mos
279                         mediodorsal nucleus of thalamus    s7     6-18mos
280      primary visual cortex (striate cortex, area V1/17)    s7     6-18mos
281                                      amygdaloid complex    s7     6-18mos
282                  primary motor cortex (area M1, area 4)    s7     6-18mos
283                          dorsolateral prefrontal cortex    s7     6-18mos
284  posterior (caudal) superior temporal cortex (area 22c)    s7     6-18mos
285      primary visual cortex (striate cortex, area V1/17)    s7     6-18mos
286 anterior (rostral) cingulate (medial prefrontal) cortex    s7     6-18mos
287                                  orbital frontal cortex    s7     6-18mos
288       inferolateral temporal cortex (area TEv, area 20)    s7     6-18mos
289     primary somatosensory cortex (area S1, areas 3,1,2)    s7     6-18mos
290                         ventrolateral prefrontal cortex    s7     6-18mos
291                                       cerebellar cortex    s7     6-18mos
292                          primary auditory cortex (core)    s7     6-18mos
293                         mediodorsal nucleus of thalamus    s7     6-18mos
294                     hippocampus (hippocampal formation)    s7     6-18mos
295               posteroventral (inferior) parietal cortex    s7     6-18mos
296                                                striatum    s7     6-18mos
297                         ventrolateral prefrontal cortex    s8  19mos-5yrs
298               posteroventral (inferior) parietal cortex    s8  19mos-5yrs
299     primary somatosensory cortex (area S1, areas 3,1,2)    s8  19mos-5yrs
300       inferolateral temporal cortex (area TEv, area 20)    s8  19mos-5yrs
301                         mediodorsal nucleus of thalamus    s8  19mos-5yrs
302                          dorsolateral prefrontal cortex    s8  19mos-5yrs
303 anterior (rostral) cingulate (medial prefrontal) cortex    s8  19mos-5yrs
304                                       cerebellar cortex    s8  19mos-5yrs
305                     hippocampus (hippocampal formation)    s8  19mos-5yrs
306                                  orbital frontal cortex    s8  19mos-5yrs
307      primary visual cortex (striate cortex, area V1/17)    s8  19mos-5yrs
308  posterior (caudal) superior temporal cortex (area 22c)    s8  19mos-5yrs
309                                                striatum    s8  19mos-5yrs
310  posterior (caudal) superior temporal cortex (area 22c)    s8  19mos-5yrs
311               posteroventral (inferior) parietal cortex    s8  19mos-5yrs
312       inferolateral temporal cortex (area TEv, area 20)    s8  19mos-5yrs
313                                       cerebellar cortex    s8  19mos-5yrs
314                                      amygdaloid complex    s8  19mos-5yrs
315                         ventrolateral prefrontal cortex    s8  19mos-5yrs
316                  primary motor cortex (area M1, area 4)    s8  19mos-5yrs
317                          primary auditory cortex (core)    s8  19mos-5yrs
318                         mediodorsal nucleus of thalamus    s8  19mos-5yrs
319      primary visual cortex (striate cortex, area V1/17)    s8  19mos-5yrs
320                                  orbital frontal cortex    s8  19mos-5yrs
321 anterior (rostral) cingulate (medial prefrontal) cortex    s8  19mos-5yrs
322                  primary motor cortex (area M1, area 4)    s8  19mos-5yrs
323     primary somatosensory cortex (area S1, areas 3,1,2)    s8  19mos-5yrs
324  posterior (caudal) superior temporal cortex (area 22c)    s8  19mos-5yrs
325               posteroventral (inferior) parietal cortex    s8  19mos-5yrs
326                          primary auditory cortex (core)    s8  19mos-5yrs
327                                       cerebellar cortex    s8  19mos-5yrs
328      primary visual cortex (striate cortex, area V1/17)    s8  19mos-5yrs
329                                      amygdaloid complex    s8  19mos-5yrs
330                         ventrolateral prefrontal cortex    s8  19mos-5yrs
331                          dorsolateral prefrontal cortex    s8  19mos-5yrs
332                     hippocampus (hippocampal formation)    s8  19mos-5yrs
333       inferolateral temporal cortex (area TEv, area 20)    s8  19mos-5yrs
334                                      amygdaloid complex    s8  19mos-5yrs
335                                                striatum    s8  19mos-5yrs
336                         ventrolateral prefrontal cortex    s8  19mos-5yrs
337                          dorsolateral prefrontal cortex    s8  19mos-5yrs
338  posterior (caudal) superior temporal cortex (area 22c)    s8  19mos-5yrs
339                                       cerebellar cortex    s8  19mos-5yrs
340                         mediodorsal nucleus of thalamus    s8  19mos-5yrs
341       inferolateral temporal cortex (area TEv, area 20)    s9     6-11yrs
342     primary somatosensory cortex (area S1, areas 3,1,2)    s9     6-11yrs
343               posteroventral (inferior) parietal cortex    s9     6-11yrs
344      primary visual cortex (striate cortex, area V1/17)    s9     6-11yrs
345  posterior (caudal) superior temporal cortex (area 22c)    s9     6-11yrs
346                         mediodorsal nucleus of thalamus    s9     6-11yrs
347                         ventrolateral prefrontal cortex    s9     6-11yrs
348                     hippocampus (hippocampal formation)    s9     6-11yrs
349                                      amygdaloid complex    s9     6-11yrs
350                  primary motor cortex (area M1, area 4)    s9     6-11yrs
351                                       cerebellar cortex    s9     6-11yrs
352                          dorsolateral prefrontal cortex    s9     6-11yrs
353                                                striatum    s9     6-11yrs
354                          primary auditory cortex (core)    s9     6-11yrs
355 anterior (rostral) cingulate (medial prefrontal) cortex    s9     6-11yrs
356                                  orbital frontal cortex    s9     6-11yrs
357 anterior (rostral) cingulate (medial prefrontal) cortex    s9     6-11yrs
358                                       cerebellar cortex    s9     6-11yrs
359                          primary auditory cortex (core)    s9     6-11yrs
360                         ventrolateral prefrontal cortex    s9     6-11yrs
361                     hippocampus (hippocampal formation)    s9     6-11yrs
362                                      amygdaloid complex    s9     6-11yrs
363      primary visual cortex (striate cortex, area V1/17)    s9     6-11yrs
364               posteroventral (inferior) parietal cortex    s9     6-11yrs
365                          dorsolateral prefrontal cortex    s9     6-11yrs
366  posterior (caudal) superior temporal cortex (area 22c)    s9     6-11yrs
367       inferolateral temporal cortex (area TEv, area 20)    s9     6-11yrs
368                         ventrolateral prefrontal cortex    s9     6-11yrs
369               posteroventral (inferior) parietal cortex    s9     6-11yrs
370       inferolateral temporal cortex (area TEv, area 20)    s9     6-11yrs
371  posterior (caudal) superior temporal cortex (area 22c)    s9     6-11yrs
372     primary somatosensory cortex (area S1, areas 3,1,2)    s9     6-11yrs
373                          dorsolateral prefrontal cortex    s9     6-11yrs
374                                      amygdaloid complex    s9     6-11yrs
375      primary visual cortex (striate cortex, area V1/17)    s9     6-11yrs
376                                       cerebellar cortex    s9     6-11yrs
377                          primary auditory cortex (core)    s9     6-11yrs
378                     hippocampus (hippocampal formation)    s9     6-11yrs
379                  primary motor cortex (area M1, area 4)    s9     6-11yrs
380                                  orbital frontal cortex    s9     6-11yrs
381 anterior (rostral) cingulate (medial prefrontal) cortex    s9     6-11yrs
382 anterior (rostral) cingulate (medial prefrontal) cortex   s10    12-19yrs
383               posteroventral (inferior) parietal cortex   s10    12-19yrs
384                         ventrolateral prefrontal cortex   s10    12-19yrs
385                          primary auditory cortex (core)   s10    12-19yrs
386       inferolateral temporal cortex (area TEv, area 20)   s10    12-19yrs
387  posterior (caudal) superior temporal cortex (area 22c)   s10    12-19yrs
388                                       cerebellar cortex   s10    12-19yrs
389      primary visual cortex (striate cortex, area V1/17)   s10    12-19yrs
390     primary somatosensory cortex (area S1, areas 3,1,2)   s10    12-19yrs
391                          dorsolateral prefrontal cortex   s10    12-19yrs
392                                  orbital frontal cortex   s10    12-19yrs
393                         mediodorsal nucleus of thalamus   s10    12-19yrs
394                                      amygdaloid complex   s10    12-19yrs
395                  primary motor cortex (area M1, area 4)   s10    12-19yrs
396                     hippocampus (hippocampal formation)   s10    12-19yrs
397                                                striatum   s10    12-19yrs
398               posteroventral (inferior) parietal cortex   s10    12-19yrs
399                                       cerebellar cortex   s10    12-19yrs
400  posterior (caudal) superior temporal cortex (area 22c)   s10    12-19yrs
401       inferolateral temporal cortex (area TEv, area 20)   s10    12-19yrs
402                                      amygdaloid complex   s10    12-19yrs
403                     hippocampus (hippocampal formation)   s10    12-19yrs
404                  primary motor cortex (area M1, area 4)   s10    12-19yrs
405      primary visual cortex (striate cortex, area V1/17)   s10    12-19yrs
406                          primary auditory cortex (core)   s10    12-19yrs
407       inferolateral temporal cortex (area TEv, area 20)   s10    12-19yrs
408                         ventrolateral prefrontal cortex   s10    12-19yrs
409 anterior (rostral) cingulate (medial prefrontal) cortex   s10    12-19yrs
410  posterior (caudal) superior temporal cortex (area 22c)   s10    12-19yrs
411                          dorsolateral prefrontal cortex   s10    12-19yrs
412     primary somatosensory cortex (area S1, areas 3,1,2)   s10    12-19yrs
413               posteroventral (inferior) parietal cortex   s10    12-19yrs
414                                  orbital frontal cortex   s10    12-19yrs
415                                       cerebellar cortex   s10    12-19yrs
416  posterior (caudal) superior temporal cortex (area 22c)   s10    12-19yrs
417                                       cerebellar cortex   s10    12-19yrs
418                          dorsolateral prefrontal cortex   s10    12-19yrs
419                                      amygdaloid complex   s10    12-19yrs
420                                  orbital frontal cortex   s10    12-19yrs
421       inferolateral temporal cortex (area TEv, area 20)   s10    12-19yrs
422                                                striatum   s10    12-19yrs
423     primary somatosensory cortex (area S1, areas 3,1,2)   s10    12-19yrs
424                  primary motor cortex (area M1, area 4)   s10    12-19yrs
425                     hippocampus (hippocampal formation)   s10    12-19yrs
426                          primary auditory cortex (core)   s10    12-19yrs
427      primary visual cortex (striate cortex, area V1/17)   s10    12-19yrs
428               posteroventral (inferior) parietal cortex   s10    12-19yrs
429                         ventrolateral prefrontal cortex   s10    12-19yrs
430 anterior (rostral) cingulate (medial prefrontal) cortex   s10    12-19yrs
431                         mediodorsal nucleus of thalamus   s10    12-19yrs
432 anterior (rostral) cingulate (medial prefrontal) cortex   s11    20-29yrs
433                  primary motor cortex (area M1, area 4)   s11    20-29yrs
434                          primary auditory cortex (core)   s11    20-29yrs
435                          dorsolateral prefrontal cortex   s11    20-29yrs
436                                      amygdaloid complex   s11    20-29yrs
437                         mediodorsal nucleus of thalamus   s11    20-29yrs
438      primary visual cortex (striate cortex, area V1/17)   s11    20-29yrs
439  posterior (caudal) superior temporal cortex (area 22c)   s11    20-29yrs
440                         ventrolateral prefrontal cortex   s11    20-29yrs
441                                       cerebellar cortex   s11    20-29yrs
442     primary somatosensory cortex (area S1, areas 3,1,2)   s11    20-29yrs
443       inferolateral temporal cortex (area TEv, area 20)   s11    20-29yrs
444               posteroventral (inferior) parietal cortex   s11    20-29yrs
445                     hippocampus (hippocampal formation)   s11    20-29yrs
446                                                striatum   s11    20-29yrs
447                                  orbital frontal cortex   s11    20-29yrs
448       inferolateral temporal cortex (area TEv, area 20)   s11    20-29yrs
449                                      amygdaloid complex   s11    20-29yrs
450                                  orbital frontal cortex   s11    20-29yrs
451                         mediodorsal nucleus of thalamus   s11    20-29yrs
452  posterior (caudal) superior temporal cortex (area 22c)   s11    20-29yrs
453                         ventrolateral prefrontal cortex   s11    20-29yrs
454 anterior (rostral) cingulate (medial prefrontal) cortex   s11    20-29yrs
455                  primary motor cortex (area M1, area 4)   s11    20-29yrs
456                     hippocampus (hippocampal formation)   s11    20-29yrs
457                                       cerebellar cortex   s11    20-29yrs
458     primary somatosensory cortex (area S1, areas 3,1,2)   s11    20-29yrs
459                          primary auditory cortex (core)   s11    20-29yrs
460               posteroventral (inferior) parietal cortex   s11    20-29yrs
461                                                striatum   s11    20-29yrs
462       inferolateral temporal cortex (area TEv, area 20)   s12    30-39yrs
463                                                striatum   s12    30-39yrs
464 anterior (rostral) cingulate (medial prefrontal) cortex   s12    30-39yrs
465                                  orbital frontal cortex   s12    30-39yrs
466               posteroventral (inferior) parietal cortex   s12    30-39yrs
467  posterior (caudal) superior temporal cortex (area 22c)   s12    30-39yrs
468     primary somatosensory cortex (area S1, areas 3,1,2)   s12    30-39yrs
469                         mediodorsal nucleus of thalamus   s12    30-39yrs
470                     hippocampus (hippocampal formation)   s12    30-39yrs
471                          primary auditory cortex (core)   s12    30-39yrs
472      primary visual cortex (striate cortex, area V1/17)   s12    30-39yrs
473                          dorsolateral prefrontal cortex   s12    30-39yrs
474                                      amygdaloid complex   s12    30-39yrs
475                  primary motor cortex (area M1, area 4)   s12    30-39yrs
476                         ventrolateral prefrontal cortex   s12    30-39yrs
477                                       cerebellar cortex   s12    30-39yrs
478                  primary motor cortex (area M1, area 4)   s12    30-39yrs
479  posterior (caudal) superior temporal cortex (area 22c)   s12    30-39yrs
480 anterior (rostral) cingulate (medial prefrontal) cortex   s12    30-39yrs
481       inferolateral temporal cortex (area TEv, area 20)   s12    30-39yrs
482               posteroventral (inferior) parietal cortex   s12    30-39yrs
483                                      amygdaloid complex   s12    30-39yrs
484                                  orbital frontal cortex   s12    30-39yrs
485                         ventrolateral prefrontal cortex   s12    30-39yrs
486                          dorsolateral prefrontal cortex   s12    30-39yrs
487                          primary auditory cortex (core)   s12    30-39yrs
488      primary visual cortex (striate cortex, area V1/17)   s12    30-39yrs
489                                       cerebellar cortex   s12    30-39yrs
490     primary somatosensory cortex (area S1, areas 3,1,2)   s12    30-39yrs
491                     hippocampus (hippocampal formation)   s12    30-39yrs
492                                                striatum   s12    30-39yrs
493                         mediodorsal nucleus of thalamus   s12    30-39yrs
494     primary somatosensory cortex (area S1, areas 3,1,2)   s12    30-39yrs
495      primary visual cortex (striate cortex, area V1/17)   s12    30-39yrs
496                                       cerebellar cortex   s12    30-39yrs
497                     hippocampus (hippocampal formation)   s12    30-39yrs
498               posteroventral (inferior) parietal cortex   s12    30-39yrs
499                         mediodorsal nucleus of thalamus   s12    30-39yrs
500                          dorsolateral prefrontal cortex   s12    30-39yrs
501                         ventrolateral prefrontal cortex   s12    30-39yrs
502       inferolateral temporal cortex (area TEv, area 20)   s12    30-39yrs
503                          primary auditory cortex (core)   s12    30-39yrs
504                  primary motor cortex (area M1, area 4)   s12    30-39yrs
505                                  orbital frontal cortex   s12    30-39yrs
506                                                striatum   s12    30-39yrs
507  posterior (caudal) superior temporal cortex (area 22c)   s12    30-39yrs
508                                      amygdaloid complex   s12    30-39yrs
509 anterior (rostral) cingulate (medial prefrontal) cortex   s12    30-39yrs
510                          dorsolateral prefrontal cortex   s13    40-49yrs
511       inferolateral temporal cortex (area TEv, area 20)   s13    40-49yrs
512                         ventrolateral prefrontal cortex   s13    40-49yrs
513                         mediodorsal nucleus of thalamus   s13    40-49yrs
514                                      amygdaloid complex   s13    40-49yrs
515                          primary auditory cortex (core)   s13    40-49yrs
516                                       cerebellar cortex   s13    40-49yrs
517      primary visual cortex (striate cortex, area V1/17)   s13    40-49yrs
518                                  orbital frontal cortex   s13    40-49yrs
519  posterior (caudal) superior temporal cortex (area 22c)   s13    40-49yrs
520               posteroventral (inferior) parietal cortex   s13    40-49yrs
521                  primary motor cortex (area M1, area 4)   s13    40-49yrs
522                     hippocampus (hippocampal formation)   s13    40-49yrs
523                                                striatum   s13    40-49yrs
524     primary somatosensory cortex (area S1, areas 3,1,2)   s13    40-49yrs
    Diagnosis    Regions  AgeNumeric    Period Braincode Hemisphere  RIN
1     Control     Cortex -0.61538462  Prenatal      <NA>       <NA>   NA
2     Control     Cortex -0.61538462  Prenatal    HSB112          R 10.0
3     Control  Subcortex -0.61538462  Prenatal    HSB112          R  9.9
4     Control     Cortex -0.61538462  Prenatal    HSB112          R 10.0
5     Control     Cortex -0.61538462  Prenatal      <NA>       <NA>   NA
6     Control Cerebellum -0.61538462  Prenatal    HSB112          R  9.9
7     Control  Subcortex -0.61538462  Prenatal    HSB112          R 10.0
8     Control  Subcortex -0.61538462  Prenatal    HSB112          R  9.9
9     Control     Cortex -0.61538462  Prenatal      <NA>       <NA>   NA
10    Control     Cortex -0.61538462  Prenatal      <NA>       <NA>   NA
11    Control     Cortex -0.61538462  Prenatal    HSB112          R  9.8
12    Control  Subcortex -0.61538462  Prenatal    HSB112          R 10.0
13    Control     Cortex -0.61538462  Prenatal    HSB112          R  9.9
14    Control  Subcortex -0.61538462  Prenatal    HSB112          R  9.9
15    Control     Cortex -0.61538462  Prenatal    HSB112          R 10.0
16    Control     Cortex -0.61538462  Prenatal      <NA>       <NA>   NA
17    Control     Cortex -0.59615385  Prenatal      <NA>       <NA>   NA
18    Control     Cortex -0.59615385  Prenatal      <NA>       <NA>   NA
19    Control  Subcortex -0.59615385  Prenatal    HSB148          L  9.5
20    Control  Subcortex -0.59615385  Prenatal    HSB148          L  9.7
21    Control Cerebellum -0.59615385  Prenatal    HSB148          L  9.5
22    Control  Subcortex -0.59615385  Prenatal    HSB148          L 10.0
23    Control     Cortex -0.59615385  Prenatal    HSB148          L 10.0
24    Control     Cortex -0.59615385  Prenatal    HSB148          L 10.0
25    Control     Cortex -0.59615385  Prenatal      <NA>       <NA>   NA
26    Control  Subcortex -0.59615385  Prenatal    HSB148          L  9.5
27    Control     Cortex -0.59615385  Prenatal      <NA>       <NA>   NA
28    Control  Subcortex -0.59615385  Prenatal    HSB148          L  9.8
29    Control     Cortex -0.59615385  Prenatal    HSB148          L 10.0
30    Control     Cortex -0.59615385  Prenatal      <NA>       <NA>   NA
31    Control  Subcortex -0.53846154  Prenatal    HSB153          R  9.0
32    Control  Subcortex -0.53846154  Prenatal      <NA>       <NA>   NA
33    Control  Subcortex -0.53846154  Prenatal    HSB153          R  9.3
34    Control     Cortex -0.53846154  Prenatal    HSB153          R  9.9
35    Control     Cortex -0.53846154  Prenatal    HSB153          R 10.0
36    Control     Cortex -0.53846154  Prenatal      <NA>       <NA>   NA
37    Control  Subcortex -0.53846154  Prenatal    HSB153          R  9.7
38    Control     Cortex -0.53846154  Prenatal    HSB153          R 10.0
39    Control     Cortex -0.53846154  Prenatal      <NA>       <NA>   NA
40    Control     Cortex -0.53846154  Prenatal    HSB153          R  9.9
41    Control     Cortex -0.53846154  Prenatal    HSB153          R 10.0
42    Control     Cortex -0.53846154  Prenatal    HSB153          R  9.8
43    Control     Cortex -0.53846154  Prenatal    HSB153          R 10.0
44    Control     Cortex -0.53846154  Prenatal    HSB153          R  9.6
45    Control     Cortex -0.53846154  Prenatal    HSB153          R 10.0
46    Control     Cortex -0.53846154  Prenatal    HSB150          R  9.5
47    Control     Cortex -0.53846154  Prenatal    HSB150          R  9.7
48    Control     Cortex -0.53846154  Prenatal    HSB150          R  9.6
49    Control Cerebellum -0.53846154  Prenatal      <NA>       <NA>   NA
50    Control     Cortex -0.53846154  Prenatal    HSB150          R  9.6
51    Control     Cortex -0.53846154  Prenatal    HSB150          R  9.4
52    Control     Cortex -0.53846154  Prenatal    HSB150          R  9.4
53    Control  Subcortex -0.53846154  Prenatal      <NA>       <NA>   NA
54    Control  Subcortex -0.53846154  Prenatal    HSB150          R  9.3
55    Control     Cortex -0.53846154  Prenatal      <NA>       <NA>   NA
56    Control     Cortex -0.53846154  Prenatal    HSB150          R  9.3
57    Control     Cortex -0.53846154  Prenatal    HSB150          R  9.7
58    Control     Cortex -0.53846154  Prenatal    HSB150          R  9.4
59    Control  Subcortex -0.53846154  Prenatal    HSB150          R  8.9
60    Control  Subcortex -0.53846154  Prenatal    HSB150          R  9.6
61    Control  Subcortex -0.53846154  Prenatal    HSB113          R  9.7
62    Control     Cortex -0.53846154  Prenatal    HSB113          R  9.4
63    Control     Cortex -0.53846154  Prenatal    HSB113          R  9.6
64    Control     Cortex -0.53846154  Prenatal    HSB113          R  9.4
65    Control  Subcortex -0.53846154  Prenatal    HSB113          R  9.6
66    Control Cerebellum -0.53846154  Prenatal    HSB113          R  9.5
67    Control  Subcortex -0.53846154  Prenatal      <NA>       <NA>   NA
68    Control     Cortex -0.53846154  Prenatal      <NA>       <NA>   NA
69    Control     Cortex -0.53846154  Prenatal    HSB113          R  9.5
70    Control     Cortex -0.53846154  Prenatal    HSB113          R  9.7
71    Control     Cortex -0.53846154  Prenatal    HSB113          R  9.8
72    Control     Cortex -0.53846154  Prenatal      <NA>       <NA>   NA
73    Control  Subcortex -0.53846154  Prenatal    HSB113          R  9.6
74    Control     Cortex -0.53846154  Prenatal    HSB113          R  9.4
75    Control     Cortex -0.53846154  Prenatal    HSB113          R  9.5
76    Control  Subcortex -0.51923077  Prenatal    HSB114          L  9.7
77    Control     Cortex -0.51923077  Prenatal    HSB114          L  9.7
78    Control  Subcortex -0.51923077  Prenatal    HSB114          L 10.0
79    Control     Cortex -0.51923077  Prenatal    HSB114          L  9.7
80    Control     Cortex -0.51923077  Prenatal    HSB114          L  9.9
81    Control     Cortex -0.51923077  Prenatal    HSB114          L  9.6
82    Control  Subcortex -0.51923077  Prenatal    HSB114          L  8.9
83    Control     Cortex -0.51923077  Prenatal    HSB114          L  9.6
84    Control     Cortex -0.51923077  Prenatal      <NA>       <NA>   NA
85    Control     Cortex -0.51923077  Prenatal    HSB114          L  9.5
86    Control     Cortex -0.51923077  Prenatal    HSB114          L  9.4
87    Control     Cortex -0.51923077  Prenatal    HSB114          L  9.8
88    Control     Cortex -0.51923077  Prenatal      <NA>       <NA>   NA
89    Control     Cortex -0.51923077  Prenatal    HSB114          L  9.7
90    Control  Subcortex -0.51923077  Prenatal    HSB149          L 10.0
91    Control     Cortex -0.51923077  Prenatal    HSB149          L  9.9
92    Control     Cortex -0.51923077  Prenatal    HSB149          L  9.8
93    Control  Subcortex -0.51923077  Prenatal    HSB149          L  9.5
94    Control     Cortex -0.51923077  Prenatal    HSB149          L  9.7
95    Control Cerebellum -0.51923077  Prenatal      <NA>       <NA>   NA
96    Control     Cortex -0.51923077  Prenatal      <NA>       <NA>   NA
97    Control     Cortex -0.51923077  Prenatal    HSB149          L 10.0
98    Control     Cortex -0.51923077  Prenatal    HSB149          L  9.0
99    Control     Cortex -0.51923077  Prenatal    HSB149          L  9.4
100   Control  Subcortex -0.51923077  Prenatal    HSB149          L  9.8
101   Control     Cortex -0.51923077  Prenatal    HSB149          L 10.0
102   Control     Cortex -0.51923077  Prenatal    HSB149          L  9.5
103   Control  Subcortex -0.51923077  Prenatal    HSB149          L  9.7
104   Control     Cortex -0.51923077  Prenatal      <NA>       <NA>   NA
105   Control     Cortex -0.51923077  Prenatal    HSB149          L  9.3
106   Control     Cortex -0.51923077  Prenatal    HSB103          R 10.0
107   Control     Cortex -0.51923077  Prenatal      <NA>       <NA>   NA
108   Control Cerebellum -0.51923077  Prenatal      <NA>       <NA>   NA
109   Control  Subcortex -0.51923077  Prenatal    HSB103          R 10.0
110   Control     Cortex -0.51923077  Prenatal    HSB103          R  9.5
111   Control  Subcortex -0.51923077  Prenatal    HSB103          R 10.0
112   Control     Cortex -0.51923077  Prenatal    HSB103          R 10.0
113   Control     Cortex -0.51923077  Prenatal    HSB103          R  9.7
114   Control     Cortex -0.51923077  Prenatal    HSB103          R  9.4
115   Control  Subcortex -0.51923077  Prenatal    HSB103          R  9.6
116   Control     Cortex -0.51923077  Prenatal    HSB103          R  9.3
117   Control     Cortex -0.51923077  Prenatal      <NA>       <NA>   NA
118   Control     Cortex -0.51923077  Prenatal    HSB103          R  9.9
119   Control     Cortex -0.51923077  Prenatal    HSB103          R 10.0
120   Control     Cortex -0.46153846  Prenatal     HSB96          R  8.8
121   Control     Cortex -0.46153846  Prenatal      <NA>       <NA>   NA
122   Control     Cortex -0.46153846  Prenatal     HSB96          R  9.7
123   Control     Cortex -0.46153846  Prenatal      <NA>       <NA>   NA
124   Control     Cortex -0.46153846  Prenatal     HSB96          R  9.0
125   Control     Cortex -0.46153846  Prenatal     HSB96          R  9.2
126   Control     Cortex -0.46153846  Prenatal      <NA>       <NA>   NA
127   Control  Subcortex -0.46153846  Prenatal     HSB96          R  9.7
128   Control  Subcortex -0.46153846  Prenatal     HSB96          R  7.8
129   Control     Cortex -0.46153846  Prenatal     HSB96          R  9.2
130   Control     Cortex -0.46153846  Prenatal    HSB178          L  9.7
131   Control     Cortex -0.46153846  Prenatal    HSB178          L  9.4
132   Control     Cortex -0.46153846  Prenatal    HSB178          L  9.6
133   Control     Cortex -0.46153846  Prenatal    HSB178          L  9.8
134   Control  Subcortex -0.46153846  Prenatal    HSB178          L 10.0
135   Control  Subcortex -0.46153846  Prenatal    HSB178          L  9.8
136   Control     Cortex -0.46153846  Prenatal    HSB178          L  9.9
137   Control     Cortex -0.46153846  Prenatal    HSB178          L  9.8
138   Control Cerebellum -0.46153846  Prenatal    HSB178          L  9.5
139   Control  Subcortex -0.46153846  Prenatal    HSB178          L  9.9
140   Control  Subcortex -0.46153846  Prenatal    HSB178          L 10.0
141   Control     Cortex -0.46153846  Prenatal    HSB178          L  9.9
142   Control     Cortex -0.46153846  Prenatal      <NA>       <NA>   NA
143   Control     Cortex -0.46153846  Prenatal    HSB178          L  9.7
144   Control     Cortex -0.46153846  Prenatal      <NA>       <NA>   NA
145   Control     Cortex -0.46153846  Prenatal    HSB178          L  9.7
146   Control  Subcortex -0.46153846  Prenatal    HSB154          R 10.0
147   Control     Cortex -0.46153846  Prenatal    HSB154          R 10.0
148   Control     Cortex -0.46153846  Prenatal      <NA>       <NA>   NA
149   Control     Cortex -0.46153846  Prenatal    HSB154          R 10.0
150   Control     Cortex -0.46153846  Prenatal    HSB154          R  9.7
151   Control     Cortex -0.46153846  Prenatal    HSB154          R  9.8
152   Control  Subcortex -0.46153846  Prenatal    HSB154          R  9.9
153   Control  Subcortex -0.46153846  Prenatal    HSB154          R 10.0
154   Control     Cortex -0.46153846  Prenatal    HSB154          R 10.0
155   Control     Cortex -0.46153846  Prenatal    HSB154          R  9.9
156   Control     Cortex -0.46153846  Prenatal    HSB154          R 10.0
157   Control  Subcortex -0.46153846  Prenatal    HSB154          R  9.8
158   Control     Cortex -0.46153846  Prenatal      <NA>       <NA>   NA
159   Control  Subcortex -0.44230769  Prenatal     HSB97          L  9.1
160   Control     Cortex -0.44230769  Prenatal     HSB97          L  9.6
161   Control  Subcortex -0.44230769  Prenatal     HSB97          L  7.8
162   Control     Cortex -0.44230769  Prenatal     HSB97          L  9.3
163   Control  Subcortex -0.44230769  Prenatal     HSB97          L  8.7
164   Control     Cortex -0.44230769  Prenatal      <NA>       <NA>   NA
165   Control     Cortex -0.44230769  Prenatal     HSB97          L  8.5
166   Control     Cortex -0.44230769  Prenatal     HSB97          L  9.3
167   Control     Cortex -0.44230769  Prenatal     HSB97          L  8.6
168   Control     Cortex -0.44230769  Prenatal     HSB97          L  9.3
169   Control Cerebellum -0.44230769  Prenatal     HSB97          L  9.6
170   Control     Cortex -0.44230769  Prenatal     HSB97          L  9.5
171   Control  Subcortex -0.44230769  Prenatal     HSB97          L  9.1
172   Control     Cortex -0.44230769  Prenatal      <NA>       <NA>   NA
173   Control     Cortex -0.40384615  Prenatal     HSB98          R  8.5
174   Control     Cortex -0.40384615  Prenatal     HSB98          R  9.0
175   Control     Cortex -0.40384615  Prenatal     HSB98          R  8.4
176   Control     Cortex -0.40384615  Prenatal      <NA>       <NA>   NA
177   Control     Cortex -0.40384615  Prenatal     HSB98          R  9.2
178   Control  Subcortex -0.40384615  Prenatal     HSB98          R  8.5
179   Control     Cortex -0.40384615  Prenatal     HSB98          R  8.9
180   Control  Subcortex -0.40384615  Prenatal     HSB98          R  7.8
181   Control     Cortex -0.40384615  Prenatal     HSB98          R  8.8
182   Control  Subcortex -0.40384615  Prenatal     HSB98          R  9.7
183   Control     Cortex -0.40384615  Prenatal      <NA>       <NA>   NA
184   Control Cerebellum -0.36538462  Prenatal    HSB107          L  8.2
185   Control     Cortex -0.36538462  Prenatal    HSB107          L  8.7
186   Control     Cortex -0.36538462  Prenatal      <NA>       <NA>   NA
187   Control     Cortex -0.36538462  Prenatal     HSB92          R  9.1
188   Control  Subcortex -0.36538462  Prenatal     HSB92          R 10.0
189   Control  Subcortex -0.36538462  Prenatal     HSB92          R  9.7
190   Control     Cortex -0.36538462  Prenatal     HSB92          R  8.7
191   Control     Cortex -0.36538462  Prenatal     HSB92          R  9.5
192   Control  Subcortex -0.36538462  Prenatal     HSB92          R  9.2
193   Control     Cortex -0.36538462  Prenatal     HSB92          R  9.5
194   Control     Cortex -0.36538462  Prenatal     HSB92          R  9.1
195   Control     Cortex -0.36538462  Prenatal     HSB92          R  9.3
196   Control     Cortex -0.36538462  Prenatal     HSB92          R  9.7
197   Control Cerebellum -0.36538462  Prenatal     HSB92          R  9.4
198   Control     Cortex -0.36538462  Prenatal     HSB92          R  8.0
199   Control     Cortex -0.36538462  Prenatal      <NA>       <NA>   NA
200   Control  Subcortex -0.30769231  Prenatal      <NA>       <NA>   NA
201   Control  Subcortex -0.30769231  Prenatal      <NA>       <NA>   NA
202   Control     Cortex -0.30769231  Prenatal      <NA>       <NA>   NA
203   Control     Cortex -0.30769231  Prenatal      <NA>       <NA>   NA
204   Control  Subcortex -0.30769231  Prenatal      <NA>       <NA>   NA
205   Control  Subcortex -0.30769231  Prenatal      <NA>       <NA>   NA
206   Control     Cortex -0.30769231  Prenatal      <NA>       <NA>   NA
207   Control     Cortex -0.30769231  Prenatal      <NA>       <NA>   NA
208   Control     Cortex -0.30769231  Prenatal      <NA>       <NA>   NA
209   Control     Cortex -0.30769231  Prenatal      <NA>       <NA>   NA
210   Control     Cortex -0.30769231  Prenatal      <NA>       <NA>   NA
211   Control     Cortex -0.30769231  Prenatal      <NA>       <NA>   NA
212   Control     Cortex -0.30769231  Prenatal      <NA>       <NA>   NA
213   Control     Cortex -0.30769231  Prenatal      <NA>       <NA>   NA
214   Control Cerebellum -0.30769231  Prenatal      <NA>       <NA>   NA
215   Control     Cortex -0.30769231  Prenatal      <NA>       <NA>   NA
216   Control     Cortex -0.28846154  Prenatal    HSB169          L  9.3
217   Control     Cortex -0.26923077  Prenatal    HSB168          L  9.3
218   Control     Cortex -0.26923077  Prenatal    HSB168          L  9.6
219   Control     Cortex -0.26923077  Prenatal      <NA>       <NA>   NA
220   Control Cerebellum -0.09615385  Prenatal      <NA>       <NA>   NA
221   Control     Cortex -0.09615385  Prenatal      <NA>       <NA>   NA
222   Control     Cortex -0.05769231  Prenatal      <NA>       <NA>   NA
223   Control     Cortex -0.05769231  Prenatal      <NA>       <NA>   NA
224   Control  Subcortex -0.05769231  Prenatal      <NA>       <NA>   NA
225   Control     Cortex -0.05769231  Prenatal      <NA>       <NA>   NA
226   Control     Cortex -0.05769231  Prenatal      <NA>       <NA>   NA
227   Control  Subcortex -0.05769231  Prenatal      <NA>       <NA>   NA
228   Control Cerebellum -0.05769231  Prenatal      <NA>       <NA>   NA
229   Control  Subcortex -0.05769231  Prenatal      <NA>       <NA>   NA
230   Control     Cortex -0.05769231  Prenatal      <NA>       <NA>   NA
231   Control     Cortex -0.05769231  Prenatal      <NA>       <NA>   NA
232   Control     Cortex -0.05769231  Prenatal      <NA>       <NA>   NA
233   Control     Cortex -0.05769231  Prenatal      <NA>       <NA>   NA
234   Control     Cortex -0.05769231  Prenatal      <NA>       <NA>   NA
235   Control     Cortex -0.05769231  Prenatal      <NA>       <NA>   NA
236   Control     Cortex -0.05769231  Prenatal      <NA>       <NA>   NA
237   Control  Subcortex -0.05769231  Prenatal      <NA>       <NA>   NA
238   Control     Cortex  0.33333333 Postnatal    HSB132          L  8.2
239   Control  Subcortex  0.33333333 Postnatal    HSB132          L  9.7
240   Control     Cortex  0.33333333 Postnatal    HSB132          L  9.5
241   Control Cerebellum  0.33333333 Postnatal    HSB132          L  9.2
242   Control  Subcortex  0.33333333 Postnatal    HSB132          L  8.4
243   Control  Subcortex  0.33333333 Postnatal    HSB132          L  9.2
244   Control     Cortex  0.33333333 Postnatal    HSB132          L  8.7
245   Control  Subcortex  0.33333333 Postnatal    HSB132          L  8.5
246   Control     Cortex  0.33333333 Postnatal      <NA>       <NA>   NA
247   Control     Cortex  0.33333333 Postnatal      <NA>       <NA>   NA
248   Control     Cortex  0.33333333 Postnatal      <NA>       <NA>   NA
249   Control     Cortex  0.33333333 Postnatal      <NA>       <NA>   NA
250   Control     Cortex  0.33333333 Postnatal      <NA>       <NA>   NA
251   Control     Cortex  0.33333333 Postnatal      <NA>       <NA>   NA
252   Control     Cortex  0.33333333 Postnatal      <NA>       <NA>   NA
253   Control     Cortex  0.33333333 Postnatal      <NA>       <NA>   NA
254   Control  Subcortex  0.33333333 Postnatal      <NA>       <NA>   NA
255   Control     Cortex  0.33333333 Postnatal    HSB139          L  7.9
256   Control  Subcortex  0.33333333 Postnatal    HSB139          L  8.8
257   Control     Cortex  0.33333333 Postnatal    HSB139          L  8.8
258   Control  Subcortex  0.33333333 Postnatal    HSB139          L  9.9
259   Control     Cortex  0.33333333 Postnatal    HSB139          L  9.0
260   Control     Cortex  0.33333333 Postnatal    HSB139          L  8.3
261   Control  Subcortex  0.33333333 Postnatal    HSB139          L  8.4
262   Control  Subcortex  0.33333333 Postnatal    HSB139          L  9.6
263   Control     Cortex  0.33333333 Postnatal      <NA>       <NA>   NA
264   Control     Cortex  0.33333333 Postnatal    HSB139          L  8.8
265   Control     Cortex  0.33333333 Postnatal    HSB139          L  9.0
266   Control     Cortex  0.33333333 Postnatal    HSB139          L  8.7
267   Control     Cortex  0.33333333 Postnatal    HSB139          L  9.6
268   Control Cerebellum  0.33333333 Postnatal    HSB139          L  9.0
269   Control     Cortex  0.33333333 Postnatal      <NA>       <NA>   NA
270   Control     Cortex  0.33333333 Postnatal    HSB139          L  7.9
271   Control     Cortex  0.83333333 Postnatal    HSB171          L  8.6
272   Control     Cortex  0.83333333 Postnatal    HSB171          L  9.0
273   Control     Cortex  0.83333333 Postnatal    HSB171          L  9.2
274   Control     Cortex  0.83333333 Postnatal      <NA>       <NA>   NA
275   Control     Cortex  0.83333333 Postnatal    HSB171          L  9.4
276   Control     Cortex  0.83333333 Postnatal      <NA>       <NA>   NA
277   Control Cerebellum  0.83333333 Postnatal    HSB171          L  9.2
278   Control     Cortex  0.83333333 Postnatal    HSB171          L  9.2
279   Control  Subcortex  0.83333333 Postnatal    HSB171          L  9.3
280   Control     Cortex  0.83333333 Postnatal    HSB171          L  8.9
281   Control  Subcortex  1.00000000 Postnatal      <NA>       <NA>   NA
282   Control     Cortex  1.00000000 Postnatal      <NA>       <NA>   NA
283   Control     Cortex  1.00000000 Postnatal      <NA>       <NA>   NA
284   Control     Cortex  1.00000000 Postnatal      <NA>       <NA>   NA
285   Control     Cortex  1.00000000 Postnatal      <NA>       <NA>   NA
286   Control     Cortex  1.00000000 Postnatal      <NA>       <NA>   NA
287   Control     Cortex  1.00000000 Postnatal      <NA>       <NA>   NA
288   Control     Cortex  1.00000000 Postnatal      <NA>       <NA>   NA
289   Control     Cortex  1.00000000 Postnatal      <NA>       <NA>   NA
290   Control     Cortex  1.00000000 Postnatal      <NA>       <NA>   NA
291   Control Cerebellum  1.00000000 Postnatal      <NA>       <NA>   NA
292   Control     Cortex  1.00000000 Postnatal      <NA>       <NA>   NA
293   Control  Subcortex  1.00000000 Postnatal      <NA>       <NA>   NA
294   Control  Subcortex  1.00000000 Postnatal      <NA>       <NA>   NA
295   Control     Cortex  1.00000000 Postnatal      <NA>       <NA>   NA
296   Control  Subcortex  1.00000000 Postnatal      <NA>       <NA>   NA
297   Control     Cortex  2.00000000 Postnatal    HSB143          R  7.5
298   Control     Cortex  2.00000000 Postnatal    HSB143          R  5.6
299   Control     Cortex  2.00000000 Postnatal    HSB143          R  6.9
300   Control     Cortex  2.00000000 Postnatal    HSB143          R  5.4
301   Control  Subcortex  2.00000000 Postnatal      <NA>       <NA>   NA
302   Control     Cortex  2.00000000 Postnatal      <NA>       <NA>   NA
303   Control     Cortex  2.00000000 Postnatal      <NA>       <NA>   NA
304   Control Cerebellum  2.00000000 Postnatal    HSB143          R  8.9
305   Control  Subcortex  2.00000000 Postnatal    HSB143          R  6.9
306   Control     Cortex  2.00000000 Postnatal    HSB143          R  6.8
307   Control     Cortex  2.00000000 Postnatal    HSB143          R  7.4
308   Control     Cortex  2.00000000 Postnatal    HSB143          R  7.8
309   Control  Subcortex  3.00000000 Postnatal    HSB173          L  8.0
310   Control     Cortex  3.00000000 Postnatal    HSB173          L  8.3
311   Control     Cortex  3.00000000 Postnatal    HSB173          L  7.8
312   Control     Cortex  3.00000000 Postnatal    HSB173          L  7.8
313   Control Cerebellum  3.00000000 Postnatal    HSB173          L  8.7
314   Control  Subcortex  3.00000000 Postnatal    HSB173          L  6.8
315   Control     Cortex  3.00000000 Postnatal    HSB173          L  8.0
316   Control     Cortex  3.00000000 Postnatal    HSB173          L  7.7
317   Control     Cortex  3.00000000 Postnatal    HSB173          L  7.2
318   Control  Subcortex  3.00000000 Postnatal    HSB173          L  7.6
319   Control     Cortex  3.00000000 Postnatal    HSB173          L  8.3
320   Control     Cortex  3.00000000 Postnatal    HSB172          L  7.7
321   Control     Cortex  3.00000000 Postnatal      <NA>       <NA>   NA
322   Control     Cortex  3.00000000 Postnatal    HSB172          L  5.9
323   Control     Cortex  3.00000000 Postnatal    HSB172          L  6.1
324   Control     Cortex  3.00000000 Postnatal    HSB172          L  6.7
325   Control     Cortex  3.00000000 Postnatal    HSB172          L  6.6
326   Control     Cortex  3.00000000 Postnatal    HSB172          L  7.4
327   Control Cerebellum  3.00000000 Postnatal    HSB172          L  8.6
328   Control     Cortex  3.00000000 Postnatal    HSB172          L  7.4
329   Control  Subcortex  3.00000000 Postnatal    HSB172          L  6.8
330   Control     Cortex  3.00000000 Postnatal    HSB172          L  6.6
331   Control     Cortex  3.00000000 Postnatal      <NA>       <NA>   NA
332   Control  Subcortex  3.00000000 Postnatal    HSB172          L  7.0
333   Control     Cortex  3.00000000 Postnatal    HSB172          L  6.0
334   Control  Subcortex  4.00000000 Postnatal    HSB118          R  7.7
335   Control  Subcortex  4.00000000 Postnatal    HSB118          R  8.2
336   Control     Cortex  4.00000000 Postnatal    HSB118          R  8.0
337   Control     Cortex  4.00000000 Postnatal      <NA>       <NA>   NA
338   Control     Cortex  4.00000000 Postnatal    HSB118          R  7.6
339   Control Cerebellum  4.00000000 Postnatal    HSB118          R  8.5
340   Control  Subcortex  4.00000000 Postnatal    HSB118          R  8.5
341   Control     Cortex  8.00000000 Postnatal    HSB141          L  7.9
342   Control     Cortex  8.00000000 Postnatal    HSB141          L  8.6
343   Control     Cortex  8.00000000 Postnatal    HSB141          L  8.3
344   Control     Cortex  8.00000000 Postnatal    HSB141          L  7.9
345   Control     Cortex  8.00000000 Postnatal    HSB141          L  7.7
346   Control  Subcortex  8.00000000 Postnatal    HSB141          L  8.4
347   Control     Cortex  8.00000000 Postnatal    HSB141          L  7.9
348   Control  Subcortex  8.00000000 Postnatal    HSB141          L  7.9
349   Control  Subcortex  8.00000000 Postnatal    HSB141          L  7.1
350   Control     Cortex  8.00000000 Postnatal    HSB141          L  8.8
351   Control Cerebellum  8.00000000 Postnatal    HSB141          L  8.7
352   Control     Cortex  8.00000000 Postnatal      <NA>       <NA>   NA
353   Control  Subcortex  8.00000000 Postnatal    HSB141          L  8.5
354   Control     Cortex  8.00000000 Postnatal    HSB141          L  8.1
355   Control     Cortex  8.00000000 Postnatal      <NA>       <NA>   NA
356   Control     Cortex  8.00000000 Postnatal    HSB141          L  8.0
357   Control     Cortex  8.00000000 Postnatal      <NA>       <NA>   NA
358   Control Cerebellum  8.00000000 Postnatal    HSB174          L  9.4
359   Control     Cortex  8.00000000 Postnatal    HSB174          L  9.3
360   Control     Cortex  8.00000000 Postnatal    HSB174          L  9.2
361   Control  Subcortex  8.00000000 Postnatal    HSB174          L  9.4
362   Control  Subcortex  8.00000000 Postnatal    HSB174          L  9.3
363   Control     Cortex  8.00000000 Postnatal    HSB174          L  9.5
364   Control     Cortex  8.00000000 Postnatal    HSB174          L  8.1
365   Control     Cortex  8.00000000 Postnatal      <NA>       <NA>   NA
366   Control     Cortex  8.00000000 Postnatal    HSB174          L  8.8
367   Control     Cortex  8.00000000 Postnatal    HSB174          L  8.9
368   Control     Cortex 11.00000000 Postnatal    HSB175          L  9.2
369   Control     Cortex 11.00000000 Postnatal    HSB175          L  8.4
370   Control     Cortex 11.00000000 Postnatal    HSB175          L  8.4
371   Control     Cortex 11.00000000 Postnatal    HSB175          L  7.8
372   Control     Cortex 11.00000000 Postnatal    HSB175          L  8.8
373   Control     Cortex 11.00000000 Postnatal      <NA>       <NA>   NA
374   Control  Subcortex 11.00000000 Postnatal    HSB175          L  9.4
375   Control     Cortex 11.00000000 Postnatal    HSB175          L  9.1
376   Control Cerebellum 11.00000000 Postnatal    HSB175          L  9.2
377   Control     Cortex 11.00000000 Postnatal    HSB175          L  9.1
378   Control  Subcortex 11.00000000 Postnatal    HSB175          L  9.4
379   Control     Cortex 11.00000000 Postnatal    HSB175          L  8.8
380   Control     Cortex 11.00000000 Postnatal    HSB175          L  8.9
381   Control     Cortex 11.00000000 Postnatal      <NA>       <NA>   NA
382   Control     Cortex 13.00000000 Postnatal      <NA>       <NA>   NA
383   Control     Cortex 13.00000000 Postnatal    HSB124          R  9.5
384   Control     Cortex 13.00000000 Postnatal    HSB124          R  9.4
385   Control     Cortex 13.00000000 Postnatal    HSB124          R  9.8
386   Control     Cortex 13.00000000 Postnatal    HSB124          R  9.2
387   Control     Cortex 13.00000000 Postnatal    HSB124          R  9.1
388   Control Cerebellum 13.00000000 Postnatal    HSB124          R  9.4
389   Control     Cortex 13.00000000 Postnatal    HSB124          R  9.4
390   Control     Cortex 13.00000000 Postnatal    HSB124          R  9.2
391   Control     Cortex 13.00000000 Postnatal      <NA>       <NA>   NA
392   Control     Cortex 13.00000000 Postnatal    HSB124          R  9.2
393   Control  Subcortex 13.00000000 Postnatal    HSB124          R  8.8
394   Control  Subcortex 13.00000000 Postnatal    HSB124          R  8.8
395   Control     Cortex 13.00000000 Postnatal    HSB124          R  9.4
396   Control  Subcortex 13.00000000 Postnatal    HSB124          R  8.9
397   Control  Subcortex 13.00000000 Postnatal    HSB124          R  9.3
398   Control     Cortex 15.00000000 Postnatal    HSB119          L  9.8
399   Control Cerebellum 15.00000000 Postnatal    HSB119          L 10.0
400   Control     Cortex 15.00000000 Postnatal    HSB119          L  9.8
401   Control     Cortex 15.00000000 Postnatal    HSB119          L 10.0
402   Control  Subcortex 15.00000000 Postnatal    HSB119          L 10.0
403   Control  Subcortex 18.00000000 Postnatal      <NA>       <NA>   NA
404   Control     Cortex 18.00000000 Postnatal      <NA>       <NA>   NA
405   Control     Cortex 18.00000000 Postnatal      <NA>       <NA>   NA
406   Control     Cortex 18.00000000 Postnatal      <NA>       <NA>   NA
407   Control     Cortex 18.00000000 Postnatal      <NA>       <NA>   NA
408   Control     Cortex 18.00000000 Postnatal      <NA>       <NA>   NA
409   Control     Cortex 18.00000000 Postnatal      <NA>       <NA>   NA
410   Control     Cortex 18.00000000 Postnatal      <NA>       <NA>   NA
411   Control     Cortex 18.00000000 Postnatal      <NA>       <NA>   NA
412   Control     Cortex 18.00000000 Postnatal      <NA>       <NA>   NA
413   Control     Cortex 18.00000000 Postnatal      <NA>       <NA>   NA
414   Control     Cortex 18.00000000 Postnatal      <NA>       <NA>   NA
415   Control Cerebellum 18.00000000 Postnatal      <NA>       <NA>   NA
416   Control     Cortex 19.00000000 Postnatal      <NA>       <NA>   NA
417   Control Cerebellum 19.00000000 Postnatal      <NA>       <NA>   NA
418   Control     Cortex 19.00000000 Postnatal      <NA>       <NA>   NA
419   Control  Subcortex 19.00000000 Postnatal      <NA>       <NA>   NA
420   Control     Cortex 19.00000000 Postnatal      <NA>       <NA>   NA
421   Control     Cortex 19.00000000 Postnatal      <NA>       <NA>   NA
422   Control  Subcortex 19.00000000 Postnatal      <NA>       <NA>   NA
423   Control     Cortex 19.00000000 Postnatal      <NA>       <NA>   NA
424   Control     Cortex 19.00000000 Postnatal      <NA>       <NA>   NA
425   Control  Subcortex 19.00000000 Postnatal      <NA>       <NA>   NA
426   Control     Cortex 19.00000000 Postnatal      <NA>       <NA>   NA
427   Control     Cortex 19.00000000 Postnatal      <NA>       <NA>   NA
428   Control     Cortex 19.00000000 Postnatal      <NA>       <NA>   NA
429   Control     Cortex 19.00000000 Postnatal      <NA>       <NA>   NA
430   Control     Cortex 19.00000000 Postnatal      <NA>       <NA>   NA
431   Control  Subcortex 19.00000000 Postnatal      <NA>       <NA>   NA
432   Control     Cortex 21.00000000 Postnatal      <NA>       <NA>   NA
433   Control     Cortex 21.00000000 Postnatal    HSB130          L  9.3
434   Control     Cortex 21.00000000 Postnatal    HSB130          L  8.8
435   Control     Cortex 21.00000000 Postnatal      <NA>       <NA>   NA
436   Control  Subcortex 21.00000000 Postnatal    HSB130          L  8.6
437   Control  Subcortex 21.00000000 Postnatal    HSB130          L  8.1
438   Control     Cortex 21.00000000 Postnatal    HSB130          L  9.5
439   Control     Cortex 21.00000000 Postnatal    HSB130          L  9.3
440   Control     Cortex 21.00000000 Postnatal    HSB130          L  8.9
441   Control Cerebellum 21.00000000 Postnatal    HSB130          L  9.2
442   Control     Cortex 21.00000000 Postnatal    HSB130          L  9.2
443   Control     Cortex 21.00000000 Postnatal    HSB130          L  9.2
444   Control     Cortex 21.00000000 Postnatal    HSB130          L  9.2
445   Control  Subcortex 21.00000000 Postnatal    HSB130          L  8.7
446   Control  Subcortex 21.00000000 Postnatal    HSB130          L  9.3
447   Control     Cortex 21.00000000 Postnatal    HSB130          L  8.2
448   Control     Cortex 23.00000000 Postnatal    HSB136          R  8.3
449   Control  Subcortex 23.00000000 Postnatal    HSB136          R  8.1
450   Control     Cortex 23.00000000 Postnatal    HSB136          R  9.0
451   Control  Subcortex 23.00000000 Postnatal    HSB136          R  7.6
452   Control     Cortex 23.00000000 Postnatal    HSB136          R  9.3
453   Control     Cortex 23.00000000 Postnatal    HSB136          R  8.6
454   Control     Cortex 23.00000000 Postnatal      <NA>       <NA>   NA
455   Control     Cortex 23.00000000 Postnatal    HSB136          R  8.4
456   Control  Subcortex 23.00000000 Postnatal    HSB136          R  8.5
457   Control Cerebellum 23.00000000 Postnatal    HSB136          R  9.5
458   Control     Cortex 23.00000000 Postnatal    HSB136          R  9.1
459   Control     Cortex 23.00000000 Postnatal    HSB136          R  9.2
460   Control     Cortex 23.00000000 Postnatal    HSB136          R  9.1
461   Control  Subcortex 23.00000000 Postnatal    HSB136          R  8.7
462   Control     Cortex 30.00000000 Postnatal    HSB126          R  8.5
463   Control  Subcortex 30.00000000 Postnatal    HSB126          R  9.2
464   Control     Cortex 30.00000000 Postnatal      <NA>       <NA>   NA
465   Control     Cortex 30.00000000 Postnatal    HSB126          R  8.7
466   Control     Cortex 30.00000000 Postnatal    HSB126          R  8.5
467   Control     Cortex 30.00000000 Postnatal    HSB126          R  8.8
468   Control     Cortex 30.00000000 Postnatal    HSB126          R  8.5
469   Control  Subcortex 30.00000000 Postnatal    HSB126          R  8.6
470   Control  Subcortex 30.00000000 Postnatal    HSB126          R  8.6
471   Control     Cortex 30.00000000 Postnatal    HSB126          R  8.1
472   Control     Cortex 30.00000000 Postnatal    HSB126          R  8.3
473   Control     Cortex 30.00000000 Postnatal      <NA>       <NA>   NA
474   Control  Subcortex 30.00000000 Postnatal    HSB126          R  8.4
475   Control     Cortex 30.00000000 Postnatal    HSB126          R  8.7
476   Control     Cortex 30.00000000 Postnatal    HSB126          R  8.5
477   Control Cerebellum 30.00000000 Postnatal    HSB126          R  9.3
478   Control     Cortex 36.00000000 Postnatal    HSB145          R  8.2
479   Control     Cortex 36.00000000 Postnatal    HSB145          R  8.9
480   Control     Cortex 36.00000000 Postnatal      <NA>       <NA>   NA
481   Control     Cortex 36.00000000 Postnatal    HSB145          R  7.3
482   Control     Cortex 36.00000000 Postnatal    HSB145          R  8.8
483   Control  Subcortex 36.00000000 Postnatal    HSB145          R  7.5
484   Control     Cortex 36.00000000 Postnatal    HSB145          R  8.2
485   Control     Cortex 36.00000000 Postnatal    HSB145          R  8.1
486   Control     Cortex 36.00000000 Postnatal      <NA>       <NA>   NA
487   Control     Cortex 36.00000000 Postnatal    HSB145          R  9.4
488   Control     Cortex 36.00000000 Postnatal    HSB145          R  7.1
489   Control Cerebellum 36.00000000 Postnatal    HSB145          R  8.9
490   Control     Cortex 36.00000000 Postnatal    HSB145          R  8.4
491   Control  Subcortex 36.00000000 Postnatal    HSB145          R  8.2
492   Control  Subcortex 36.00000000 Postnatal    HSB145          R  8.2
493   Control  Subcortex 36.00000000 Postnatal    HSB145          R  8.6
494   Control     Cortex 37.00000000 Postnatal    HSB123          R  8.4
495   Control     Cortex 37.00000000 Postnatal    HSB123          R  7.1
496   Control Cerebellum 37.00000000 Postnatal    HSB123          R  8.9
497   Control  Subcortex 37.00000000 Postnatal    HSB123          R  8.2
498   Control     Cortex 37.00000000 Postnatal    HSB123          R  8.8
499   Control  Subcortex 37.00000000 Postnatal    HSB123          R  8.6
500   Control     Cortex 37.00000000 Postnatal      <NA>       <NA>   NA
501   Control     Cortex 37.00000000 Postnatal    HSB123          R  8.1
502   Control     Cortex 37.00000000 Postnatal    HSB123          R  7.3
503   Control     Cortex 37.00000000 Postnatal    HSB123          R  9.4
504   Control     Cortex 37.00000000 Postnatal    HSB123          R  8.2
505   Control     Cortex 37.00000000 Postnatal    HSB123          R  8.2
506   Control  Subcortex 37.00000000 Postnatal    HSB123          R  8.2
507   Control     Cortex 37.00000000 Postnatal    HSB123          R  8.9
508   Control  Subcortex 37.00000000 Postnatal    HSB123          R  7.5
509   Control     Cortex 37.00000000 Postnatal      <NA>       <NA>   NA
510   Control     Cortex 40.00000000 Postnatal      <NA>       <NA>   NA
511   Control     Cortex 40.00000000 Postnatal    HSB135          R  8.2
512   Control     Cortex 40.00000000 Postnatal    HSB135          R  9.5
513   Control  Subcortex 40.00000000 Postnatal    HSB135          R  8.5
514   Control  Subcortex 40.00000000 Postnatal    HSB135          R  8.5
515   Control     Cortex 40.00000000 Postnatal    HSB135          R  8.5
516   Control Cerebellum 40.00000000 Postnatal    HSB135          R  9.3
517   Control     Cortex 40.00000000 Postnatal    HSB135          R  9.2
518   Control     Cortex 40.00000000 Postnatal    HSB135          R  9.2
519   Control     Cortex 40.00000000 Postnatal    HSB135          R  9.1
520   Control     Cortex 40.00000000 Postnatal    HSB135          R  9.2
521   Control     Cortex 40.00000000 Postnatal    HSB135          R  8.6
522   Control  Subcortex 40.00000000 Postnatal    HSB135          R  7.8
523   Control  Subcortex 40.00000000 Postnatal    HSB135          R  9.3
524   Control     Cortex 40.00000000 Postnatal    HSB135          R  8.8
    Dissectionscore  PMI   pH Ethnicity
1                NA <NA> <NA>      <NA>
2                 5    1 6.94         E
3                 3    1 6.94         E
4                 4    1 6.94         E
5                NA <NA> <NA>      <NA>
6                 4    1 6.94         E
7                 3    1 6.94         E
8                 5    1 6.94         E
9                NA <NA> <NA>      <NA>
10               NA <NA> <NA>      <NA>
11                5    1 6.94         E
12                5    1 6.94         E
13                4    1 6.94         E
14                4    1 6.94         E
15                5    1 6.94         E
16               NA <NA> <NA>      <NA>
17               NA <NA> <NA>      <NA>
18               NA <NA> <NA>      <NA>
19                4    1 6.01         E
20                5    1 6.01         E
21                5    1 6.01         E
22                5    1 6.01         E
23                5    1 6.01         E
24                5    1 6.01         E
25               NA <NA> <NA>      <NA>
26                5    1 6.01         E
27               NA <NA> <NA>      <NA>
28                4    1 6.01         E
29                5    1 6.01         E
30               NA <NA> <NA>      <NA>
31                5    1   NA        As
32               NA <NA> <NA>      <NA>
33                5    1   NA        As
34                5    1   NA        As
35                5    1   NA        As
36               NA <NA> <NA>      <NA>
37                5    1   NA        As
38                5    1   NA        As
39               NA <NA> <NA>      <NA>
40                4    1   NA        As
41                5    1   NA        As
42                5    1   NA        As
43                5    1   NA        As
44                5    1   NA        As
45                5    1   NA        As
46                5    1 6.08         A
47                5    1 6.08         A
48                5    1 6.08         A
49               NA <NA> <NA>      <NA>
50                5    1 6.08         A
51                5    1 6.08         A
52                5    1 6.08         A
53               NA <NA> <NA>      <NA>
54                5    1 6.08         A
55               NA <NA> <NA>      <NA>
56                5    1 6.08         A
57                5    1 6.08         A
58                5    1 6.08         A
59                4    1 6.08         A
60                5    1 6.08         A
61                5    1 6.92       A/E
62                5    1 6.92       A/E
63                4    1 6.92       A/E
64                5    1 6.92       A/E
65                5    1 6.92       A/E
66                5    1 6.92       A/E
67               NA <NA> <NA>      <NA>
68               NA <NA> <NA>      <NA>
69                5    1 6.92       A/E
70                5    1 6.92       A/E
71                5    1 6.92       A/E
72               NA <NA> <NA>      <NA>
73                5    1 6.92       A/E
74                5    1 6.92       A/E
75                5    1 6.92       A/E
76                3    1   NA         E
77                5    1   NA         E
78                5    1   NA         E
79                5    1   NA         E
80                5    1   NA         E
81                5    1   NA         E
82                5    1   NA         E
83                5    1   NA         E
84               NA <NA> <NA>      <NA>
85                5    1   NA         E
86                5    1   NA         E
87                5    1   NA         E
88               NA <NA> <NA>      <NA>
89                5    1   NA         E
90                5    1 6.39         E
91                4    1 6.39         E
92                5    1 6.39         E
93                5    1 6.39         E
94                5    1 6.39         E
95               NA <NA> <NA>      <NA>
96               NA <NA> <NA>      <NA>
97                5    1 6.39         E
98                4    1 6.39         E
99                4    1 6.39         E
100               5    1 6.39         E
101               4    1 6.39         E
102               5    1 6.39         E
103               5    1 6.39         E
104              NA <NA> <NA>      <NA>
105               5    1 6.39         E
106               4    1   NA         E
107              NA <NA> <NA>      <NA>
108              NA <NA> <NA>      <NA>
109               4    1   NA         E
110               5    1   NA         E
111               5    1   NA         E
112               4    1   NA         E
113               4    1   NA         E
114               5    1   NA         E
115               5    1   NA         E
116               5    1   NA         E
117              NA <NA> <NA>      <NA>
118               5    1   NA         E
119               4    1   NA         E
120               5    2   NA         H
121              NA <NA> <NA>      <NA>
122               5    2   NA         H
123              NA <NA> <NA>      <NA>
124               5    2   NA         H
125               5    2   NA         H
126              NA <NA> <NA>      <NA>
127               5    2   NA         H
128               5    2   NA         H
129               5    2   NA         H
130               4    1 6.84         E
131               4    1 6.84         E
132               5    1 6.84         E
133               4    1 6.84         E
134               4    1 6.84         E
135               4    1 6.84         E
136               5    1 6.84         E
137               5    1 6.84         E
138               5    1 6.84         E
139               5    1 6.84         E
140               3    1 6.84         E
141               4    1 6.84         E
142              NA <NA> <NA>      <NA>
143               5    1 6.84         E
144              NA <NA> <NA>      <NA>
145               4    1 6.84         E
146               4    1 6.44       A/E
147               5    1 6.44       A/E
148              NA <NA> <NA>      <NA>
149               5    1 6.44       A/E
150               5    1 6.44       A/E
151               5    1 6.44       A/E
152               4    1 6.44       A/E
153               3    1 6.44       A/E
154               5    1 6.44       A/E
155               5    1 6.44       A/E
156               5    1 6.44       A/E
157               3    1 6.44       A/E
158              NA <NA> <NA>      <NA>
159               5    2   NA         E
160               5    2   NA         E
161               5    2   NA         E
162               5    2   NA         E
163               5    2   NA         E
164              NA <NA> <NA>      <NA>
165               5    2   NA         E
166               5    2   NA         E
167               5    2   NA         E
168               5    2   NA         E
169               5    2   NA         E
170               5    2   NA         E
171               5    2   NA         E
172              NA <NA> <NA>      <NA>
173               5    2   NA         H
174               5    2   NA         H
175               5    2   NA         H
176              NA <NA> <NA>      <NA>
177               5    2   NA         H
178               5    2   NA         H
179               5    2   NA         H
180               5    2   NA         H
181               5    2   NA         H
182               5    2   NA         H
183              NA <NA> <NA>      <NA>
184               5   20 6.61         E
185               5   20 6.61         E
186              NA <NA> <NA>      <NA>
187               4    4 6.65         A
188               4    4 6.65         A
189               4    4 6.65         A
190               5    4 6.65         A
191               4    4 6.65         A
192               4    4 6.65         A
193               5    4 6.65         A
194               5    4 6.65         A
195               5    4 6.65         A
196               4    4 6.65         A
197               4    4 6.65         A
198               5    4 6.65         A
199              NA <NA> <NA>      <NA>
200              NA <NA> <NA>      <NA>
201              NA <NA> <NA>      <NA>
202              NA <NA> <NA>      <NA>
203              NA <NA> <NA>      <NA>
204              NA <NA> <NA>      <NA>
205              NA <NA> <NA>      <NA>
206              NA <NA> <NA>      <NA>
207              NA <NA> <NA>      <NA>
208              NA <NA> <NA>      <NA>
209              NA <NA> <NA>      <NA>
210              NA <NA> <NA>      <NA>
211              NA <NA> <NA>      <NA>
212              NA <NA> <NA>      <NA>
213              NA <NA> <NA>      <NA>
214              NA <NA> <NA>      <NA>
215              NA <NA> <NA>      <NA>
216               5   19   NA         H
217               4   27 6.38         A
218               5   27 6.38         A
219              NA <NA> <NA>      <NA>
220              NA <NA> <NA>      <NA>
221              NA <NA> <NA>      <NA>
222              NA <NA> <NA>      <NA>
223              NA <NA> <NA>      <NA>
224              NA <NA> <NA>      <NA>
225              NA <NA> <NA>      <NA>
226              NA <NA> <NA>      <NA>
227              NA <NA> <NA>      <NA>
228              NA <NA> <NA>      <NA>
229              NA <NA> <NA>      <NA>
230              NA <NA> <NA>      <NA>
231              NA <NA> <NA>      <NA>
232              NA <NA> <NA>      <NA>
233              NA <NA> <NA>      <NA>
234              NA <NA> <NA>      <NA>
235              NA <NA> <NA>      <NA>
236              NA <NA> <NA>      <NA>
237              NA <NA> <NA>      <NA>
238               5   22  6.6         E
239               5   22  6.6         E
240               5   22  6.6         E
241               5   22  6.6         E
242               5   22  6.6         E
243               5   22  6.6         E
244               5   22  6.6         E
245               5   22  6.6         E
246              NA <NA> <NA>      <NA>
247              NA <NA> <NA>      <NA>
248              NA <NA> <NA>      <NA>
249              NA <NA> <NA>      <NA>
250              NA <NA> <NA>      <NA>
251              NA <NA> <NA>      <NA>
252              NA <NA> <NA>      <NA>
253              NA <NA> <NA>      <NA>
254              NA <NA> <NA>      <NA>
255               4   20  6.7         A
256               4   20  6.7         A
257               5   20  6.7         A
258               5   20  6.7         A
259               5   20  6.7         A
260               5   20  6.7         A
261               4   20  6.7         A
262               4   20  6.7         A
263              NA <NA> <NA>      <NA>
264               5   20  6.7         A
265               5   20  6.7         A
266               4   20  6.7         A
267               5   20  6.7         A
268               5   20  6.7         A
269              NA <NA> <NA>      <NA>
270               5   20  6.7         A
271               5   18 5.96         A
272               4   18 5.96         A
273               4   18 5.96         A
274              NA <NA> <NA>      <NA>
275               5   18 5.96         A
276              NA <NA> <NA>      <NA>
277               4   18 5.96         A
278               4   18 5.96         A
279               4   18 5.96         A
280               5   18 5.96         A
281              NA <NA> <NA>      <NA>
282              NA <NA> <NA>      <NA>
283              NA <NA> <NA>      <NA>
284              NA <NA> <NA>      <NA>
285              NA <NA> <NA>      <NA>
286              NA <NA> <NA>      <NA>
287              NA <NA> <NA>      <NA>
288              NA <NA> <NA>      <NA>
289              NA <NA> <NA>      <NA>
290              NA <NA> <NA>      <NA>
291              NA <NA> <NA>      <NA>
292              NA <NA> <NA>      <NA>
293              NA <NA> <NA>      <NA>
294              NA <NA> <NA>      <NA>
295              NA <NA> <NA>      <NA>
296              NA <NA> <NA>      <NA>
297               5   12  6.3         E
298               4   12  6.3         E
299               4   12  6.3         E
300               5   12  6.3         E
301              NA <NA> <NA>      <NA>
302              NA <NA> <NA>      <NA>
303              NA <NA> <NA>      <NA>
304               5   12  6.3         E
305               5   12  6.3         E
306               5   12  6.3         E
307               5   12  6.3         E
308               5   12  6.3         E
309               5    8 6.03         E
310               5    8 6.03         E
311               5    8 6.03         E
312               5    8 6.03         E
313               5    8 6.03         E
314               4    8 6.03         E
315               5    8 6.03         E
316               4    8 6.03         E
317               5    8 6.03         E
318               4    8 6.03         E
319               5    8 6.03         E
320               5   16 5.69         H
321              NA <NA> <NA>      <NA>
322               4   16 5.69         H
323               4   16 5.69         H
324               5   16 5.69         H
325               5   16 5.69         H
326               4   16 5.69         H
327               5   16 5.69         H
328               5   16 5.69         H
329               4   16 5.69         H
330               5   16 5.69         H
331              NA <NA> <NA>      <NA>
332               4   16 5.69         H
333               5   16 5.69         H
334               5   20 6.52         A
335               5   20 6.52         A
336               4   20 6.52         A
337              NA <NA> <NA>      <NA>
338               5   20 6.52         A
339               5   20 6.52         A
340               5   20 6.52         A
341               5   30 6.54         A
342               4   30 6.54         A
343               5   30 6.54         A
344               5   30 6.54         A
345               5   30 6.54         A
346               5   30 6.54         A
347               5   30 6.54         A
348               5   30 6.54         A
349               5   30 6.54         A
350               4   30 6.54         A
351               5   30 6.54         A
352              NA <NA> <NA>      <NA>
353               5   30 6.54         A
354               5   30 6.54         A
355              NA <NA> <NA>      <NA>
356               5   30 6.54         A
357              NA <NA> <NA>      <NA>
358               5   16 6.25         A
359               5   16 6.25         A
360               5   16 6.25         A
361               5   16 6.25         A
362               4   16 6.25         A
363               5   16 6.25         A
364               5   16 6.25         A
365              NA <NA> <NA>      <NA>
366               5   16 6.25         A
367               5   16 6.25         A
368               5   22  6.7         A
369               5   22  6.7         A
370               5   22  6.7         A
371               5   22  6.7         A
372               5   22  6.7         A
373              NA <NA> <NA>      <NA>
374               4   22  6.7         A
375               5   22  6.7         A
376               5   22  6.7         A
377               5   22  6.7         A
378               4   22  6.7         A
379               5   22  6.7         A
380               5   22  6.7         A
381              NA <NA> <NA>      <NA>
382              NA <NA> <NA>      <NA>
383               5 19.5 6.34         A
384               5 19.5 6.34         A
385               5 19.5 6.34         A
386               5 19.5 6.34         A
387               5 19.5 6.34         A
388               5 19.5 6.34         A
389               5 19.5 6.34         A
390               5 19.5 6.34         A
391              NA <NA> <NA>      <NA>
392               5 19.5 6.34         A
393               5 19.5 6.34         A
394               5 19.5 6.34         A
395               5 19.5 6.34         A
396               5 19.5 6.34         A
397               5 19.5 6.34         A
398               5 14.5 6.93         A
399               5 14.5 6.93         A
400               5 14.5 6.93         A
401               5 14.5 6.93         A
402               3 14.5 6.93         A
403              NA <NA> <NA>      <NA>
404              NA <NA> <NA>      <NA>
405              NA <NA> <NA>      <NA>
406              NA <NA> <NA>      <NA>
407              NA <NA> <NA>      <NA>
408              NA <NA> <NA>      <NA>
409              NA <NA> <NA>      <NA>
410              NA <NA> <NA>      <NA>
411              NA <NA> <NA>      <NA>
412              NA <NA> <NA>      <NA>
413              NA <NA> <NA>      <NA>
414              NA <NA> <NA>      <NA>
415              NA <NA> <NA>      <NA>
416              NA <NA> <NA>      <NA>
417              NA <NA> <NA>      <NA>
418              NA <NA> <NA>      <NA>
419              NA <NA> <NA>      <NA>
420              NA <NA> <NA>      <NA>
421              NA <NA> <NA>      <NA>
422              NA <NA> <NA>      <NA>
423              NA <NA> <NA>      <NA>
424              NA <NA> <NA>      <NA>
425              NA <NA> <NA>      <NA>
426              NA <NA> <NA>      <NA>
427              NA <NA> <NA>      <NA>
428              NA <NA> <NA>      <NA>
429              NA <NA> <NA>      <NA>
430              NA <NA> <NA>      <NA>
431              NA <NA> <NA>      <NA>
432              NA <NA> <NA>      <NA>
433               5   18 6.81         E
434               5   18 6.81         E
435              NA <NA> <NA>      <NA>
436               3   18 6.81         E
437               3   18 6.81         E
438               5   18 6.81         E
439               5   18 6.81         E
440               5   18 6.81         E
441               5   18 6.81         E
442               5   18 6.81         E
443               5   18 6.81         E
444               5   18 6.81         E
445               3   18 6.81         E
446               5   18 6.81         E
447               5   18 6.81         E
448               5 10.5 6.36         A
449               5 10.5 6.36         A
450               5 10.5 6.36         A
451               5 10.5 6.36         A
452               5 10.5 6.36         A
453               5 10.5 6.36         A
454              NA <NA> <NA>      <NA>
455               5 10.5 6.36         A
456               5 10.5 6.36         A
457               5 10.5 6.36         A
458               5 10.5 6.36         A
459               5 10.5 6.36         A
460               5 10.5 6.36         A
461               5 10.5 6.36         A
462               5  9.5 6.92         E
463               5  9.5 6.92         E
464              NA <NA> <NA>      <NA>
465               5  9.5 6.92         E
466               4  9.5 6.92         E
467               5  9.5 6.92         E
468               4  9.5 6.92         E
469               5  9.5 6.92         E
470               4  9.5 6.92         E
471               5  9.5 6.92         E
472               5  9.5 6.92         E
473              NA <NA> <NA>      <NA>
474               4  9.5 6.92         E
475               4  9.5 6.92         E
476               5  9.5 6.92         E
477               5  9.5 6.92         E
478               5   18 6.42         E
479               5   18 6.42         E
480              NA <NA> <NA>      <NA>
481               5   18 6.42         E
482               5   18 6.42         E
483               5   18 6.42         E
484               5   18 6.42         E
485               5   18 6.42         E
486              NA <NA> <NA>      <NA>
487               5   18 6.42         E
488               5   18 6.42         E
489               5   18 6.42         E
490               5   18 6.42         E
491               5   18 6.42         E
492               5   18 6.42         E
493               5   18 6.42         E
494               5   13 6.37         A
495               5   13 6.37         A
496               5   13 6.37         A
497               5   13 6.37         A
498               5   13 6.37         A
499               5   13 6.37         A
500              NA <NA> <NA>      <NA>
501               5   13 6.37         A
502               5   13 6.37         A
503               5   13 6.37         A
504               5   13 6.37         A
505               5   13 6.37         A
506               5   13 6.37         A
507               5   13 6.37         A
508               4   13 6.37         A
509              NA <NA> <NA>      <NA>
510              NA <NA> <NA>      <NA>
511               5 30.5 6.82         A
512               5 30.5 6.82         A
513               5 30.5 6.82         A
514               4 30.5 6.82         A
515               5 30.5 6.82         A
516               5 30.5 6.82         A
517               5 30.5 6.82         A
518               5 30.5 6.82         A
519               5 30.5 6.82         A
520               5 30.5 6.82         A
521               4 30.5 6.82         A
522               5 30.5 6.82         A
523               5 30.5 6.82         A
524               4 30.5 6.82         A
md %>% 
  DT::datatable(caption = "BrainSpan metadata after metadata harmonization")

Export

write.csv(exp, file = "/home/neuro/Documents/BrainData/Bulk/BrainSpan/Formatted/BrainSpan-exp.csv")
write.csv(md, file = "/home/neuro/Documents/BrainData/Bulk/BrainSpan/Formatted/BrainSpan-metadata.csv")

GTEx

gtex = file.path(dir, "GTEx")
gtex.annot = read.csv(here::here("data/annotations/GTEx-metadata-annot.csv"), header = TRUE)
attributes = list.files(gtex, full.names = TRUE, pattern = "\\SampleAttributesDS.txt") # Sample attributes contains sample level information
phenotype = list.files(gtex, full.names = TRUE, pattern = "\\SubjectPhenotypesDS.txt") # Phenotype level information related to each donor 
exp = list.files(gtex, full.names = TRUE, pattern = "\\gene_tpm.gct.gz") # File used for expression matrix 
    
md.attrbutes = read_tsv(attributes, col_types = c('.default' = 'c')) %>% 
      dplyr::filter(SMTS == 'Brain') %>% 
      mutate(SUBJID = sapply(str_split(SAMPID, pattern = "-"), 
                             function(x) paste(x[1:2], collapse = '-'))) %>%
  left_join(read_tsv(phenotype, col_types = c('.default' = 'c')))  %>% 
  as.data.frame()
colnames(md.attrbutes) = gtex.annot$BITColumnName[match(colnames(md.attrbutes), gtex.annot$OriginalMetadataColumnName)]
    
 md.attrbutes %<>% 
  as.data.frame() %>% 
  mutate(StructureAcronym = add_feature(.$StructureAcronym, structure_acronym)) %>% 
      mutate(Regions = add_feature(.$StructureAcronym, regions), 
             AgeInterval = paste(.$AgeInterval, "yrs", sep = ""), 
             Diagnosis = "Control", 
             Sex = ifelse(Sex == 1, "M", "F"), 
             Period = "Postnatal") %>% as.data.frame()
    
exp = read.delim(exp, skip = 2)
colnames(exp) <- gsub("\\.", "-", colnames(exp)) # Changing expression file names to match metadata SampleIDs
exp %<>% column_to_rownames("Name")
    
exp = exp %>% 
      dplyr::select(contains(md.attrbutes$SampleID))
message(paste0("Samples subsetted - Exp matrix contains ", ncol(exp), " samples"))
rownames(exp) <- sub("\\.[0-9]*$", "", rownames(exp))
    
md.attrbutes= md.attrbutes[which(md.attrbutes$SampleID %in% colnames(exp)),] 
md.attrbutes %>% 
  DT::datatable(caption="GTEx metadata after preprocessing")

Export files

write.csv(exp, file = file.path(gtex, "Formatted/GTEx-exp.csv"))
write.csv(md.attrbutes, file = file.path(gtex,"Formatted/GTEx-metadata.csv"))

Human developmental Biology Resource

Recount3 contains over 70,000 uniformly processed human RNA-seq samples. Recount provides gene, exon and exon-exon junction count matrices both in text format and as a RangedSummarizedExperiment.

The reads from recount were algined with the splice-aware Rail-RNA aligner. To compute the gene count matrices, the mapped reads were quantified with Gencode v25 with hg38 coordinates.

Unlike traditional quantification methods, recount3 provides base-pair coverage counts. Essentially, these are created in the following manner:

  • For each exonic base-pair, the number of reads overlapping at that given base pair is computed. However, as library size is provided in recount3, the coverage counts can be scaled to read counts for a given library size.
hdbr = recount3::create_rse_manual(
  project = "ERP016243",
  type = "gene"
)

hdbr_annot = read.csv(here::here("data/annotations/HDBR-metadata-annot.csv"), header=TRUE)
hdbr_supp = read_excel("/home/neuro/Documents/BrainData/Bulk/HDBR/Amended Supplementary Table 1.xlsx", 
                       sheet = 1, skip =6) %>% 
  as.data.frame()

colnames(hdbr_supp) = c("DonorID","Age", "SampleID", "Structure","Hemisphere", "Sex", "PMI")
hdbr_supp %<>% dplyr::select("DonorID","Structure", "PMI")
hdbr_phenotype = read.csv("/home/neuro/Documents/BrainData/Bulk/HDBR/hdbr-phenotype.csv", 
                          header=TRUE)
load(here::here("data/annotations/HDBR.Rda"))

md.hdbr = md.hdbr[,1:15]

colnames(md.hdbr) = hdbr_annot$BITColumnName[match(colnames(md.hdbr), hdbr_annot$OriginalMetadataColumnName)]

md.hdbr %<>% 
  as.data.frame() %>% 
  dplyr::select(-c(Block, OntologyIndividual,  KaryotypeOntology, Organism, OrganismOntology, 
                   StructureOntology, HemisphereOntology, OntologyAge)) %>% 
  mutate(AgeInterval = add_feature(.$Age, age_intervals))  %>%
  dplyr::rename("Structure"= "StructureAcronym") %>%
  left_join(strc_acr, by = "Structure") %>% 
  left_join(rgns_ftl, by = "StructureAcronym") %>% 
  mutate(Sex = toupper(Sex)) %>% 
  mutate(Sex = ifelse(str_detect(Sex,"XX"), "F",
                      ifelse(str_detect(Sex, "XY"), "M", "Unknown" )), 
         Diagnosis = c("Control"), 
         Period = c("Prenatal"))

md = colData(hdbr) %>% 
  as.data.frame() %>% 
   dplyr::select(-contains("2"))
colnames(md) = hdbr_annot$BITColumnName[match(colnames(md), hdbr_annot$OriginalMetadataColumnName)]

md.hdbr %<>%
  mutate(Hemisphere = gsub("right", "R", Hemisphere), 
         Hemisphere = gsub("left", "L", Hemisphere), 
         Hemisphere = gsub("frontal", "Frontal", Hemisphere))

hdbr_supp %<>% 
  distinct(DonorID, .keep_all = TRUE) %>% 
  mutate(PMI = ifelse(PMI == "UNKNOWN", NA, PMI))
md.hdbr %<>% 
  left_join(hdbr_supp, by = c("DonorID"))
full.md.hdbr =left_join(md.hdbr, md)
full.md.hdbr %<>%
  mutate(PMI = as.numeric(PMI))

full.md.hdbr %<>% 
  dplyr::filter(Structure.x != "stomach")
assay(hdbr, "counts") = transform_counts(hdbr, round = TRUE)

hdbr.tpm = recount::getTPM(hdbr)

filter <- rowSums(hdbr.tpm, na.rm = TRUE) > 0.05
hdbr.filter.tpm = hdbr.tpm[filter,]
hdbr.filter.tpm <- thresh(hdbr.filter.tpm)

Export data

hdbr.final = hdbr.tpm %>% 
  as.data.frame() %>% 
  dplyr::select(contains(full.md.hdbr$SampleID)) %>%
  rownames_to_column("EnsemblID") %>% 
  mutate_at(.vars = "EnsemblID", .funs = gsub, pattern = "\\.[0-9]*$", replacement = "") 

write.csv(hdbr.final,file = "/home/neuro/Documents/BrainData/Bulk/HDBR/Formatted/HDBR-exp.csv")

write.csv(full.md.hdbr, file = "/home/neuro/Documents/BrainData/Bulk/HDBR/Formatted/HDBR-metadata.csv")
full.md.hdbr %>% 
  DT::datatable(caption="HDBR metadata after harmonization")

PsychEncode

psych = file.path(dir, "PsychEncode")
pe.annot = read.csv(here::here("data/annotations/PsychEncode-metadata-annot.csv"), header=TRUE)


exp = list.files(psych, full.names = TRUE, pattern = "\\Gene_expression_matrix_TPM.txt") %>% 
      read.table(., header=TRUE, row.names = 1, check.names = FALSE)
md = list.files(psych, full.names = TRUE, pattern = "Job*") %>% read.csv(., header=TRUE) %>% 
  dplyr::filter(individualID != "2015-1")
md.clinical = read.csv(file.path(psych, "PEC_capstone_data_map_clinical.csv"), header=TRUE, check.names = FALSE)
library(ggvenn)
library(VennDiagram)

pe.overlap = list("md individual ID" = md.clinical$`Synapse: individualID`, 
                #  "md pe individual ID" = md.clinical$`resource.psychencode.org: individualID`,
                  "md original" = md$individualID,
                  "exp" = colnames(exp))
ggvenn(pe.overlap)

Version Author Date
cb203cc urwahnawaz 2024-03-14
x = calculate.overlap(pe.overlap)

xmd_only = x$a1[!x$a1 %in% x$a3]
exp_only = x$a2[!x$a2 %in% x$a3]



ind_id = x$a4
in_exp = x$a5
in_resource_id = x$a6
comp = list.files(psych, full.names = TRUE, pattern = "\\Cell_fractions*") %>% read_excel() %>%
      as.data.frame() %>% 
      column_to_rownames("CellType")
colnames(md) = pe.annot$BITColumnName[match(colnames(md), pe.annot$OriginalColumnName)]
    # Fix existing columns 
comp = comp[,-1] 
comp = as.data.frame(t(comp))
m <- match(md$SampleID, rownames(comp))
md <- cbind(md, comp[m,])

    
# PCW to age numeric 
md$AgeNumeric[grepl("PCW", md$AgeNumeric, ignore.case = TRUE)] = md$AgeNumeric[grepl("PCW", md$AgeNumeric)] %>%
  str_remove("PCW")%>% 
  as.numeric() %>% `-` (40) %>% divide_by(52)
    
md$AgeNumeric = gsub("90+", "91", md$AgeNumeric)
md$AgeNumeric =gsub("\\+", "", md$AgeNumeric)
    
    
md$AgeNumeric <- as.numeric(as.character(md$AgeNumeric))
    
md %<>%
      dplyr::filter(Diagnosis == "Affective Disorder" |
               Diagnosis == "Autism Spectrum Disorder" | 
               Diagnosis == "Bipolar Disorder" |
               Diagnosis == "Control" |
               Diagnosis == "Schizophrenia") %>% 
      mutate(Structure = c("Dorsolateral Prefrontal Cortex"),  ## Adding name of structure
             StructureAcronym = c("DLPFC")) %>%  
      mutate(Period = ifelse(.$AgeNumeric >= 0, "Postnatal", "Prenatal"))  %>%
      mutate(Age_rounded = as.character(sapply(.$AgeNumeric, num_to_round))) %>% as.data.frame() %>%
      mutate(AgeInterval = as.character(add_feature(.$Age_rounded, age_intervals)),
             Death = as.character(add_feature(.$causeDeath, death_cause))) %>% 
      mutate(Regions = c("Cortex")) %>% 
      mutate(DonorID = as.character(.$SampleID)) %>%
      dplyr::select(-Age_rounded) %>%
      as.data.frame()


exp = exp %>%
  dplyr::select(contains(md$SampleID))

md = md %>% 
  dplyr::filter(SampleID %in% colnames(exp))
exp = exp[colnames(exp) %in% md$SampleID,] 
md = md[md$SampleID %in% colnames(exp),] 

Export data

write.csv(exp, file = file.path(psych, "Formatted/PsychEncode-exp.csv"))
write.csv(md, file = file.path(psych,"Formatted/PsychEncode-metadata.csv"))
pe.processed = read.csv(file.path(psych, "Formatted/PsychEncode-exp.csv"), header=TRUE, row.names=1)
rm(md)
rm(exp)

sessionInfo()
R version 4.3.3 (2024-02-29)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.4 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0

locale:
 [1] LC_CTYPE=en_AU.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_AU.UTF-8        LC_COLLATE=en_AU.UTF-8    
 [5] LC_MONETARY=en_AU.UTF-8    LC_MESSAGES=en_AU.UTF-8   
 [7] LC_PAPER=en_AU.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C       

time zone: Australia/Adelaide
tzcode source: system (glibc)

attached base packages:
 [1] tools     grid      stats4    stats     graphics  grDevices utils    
 [8] datasets  methods   base     

other attached packages:
 [1] VennDiagram_1.7.3           futile.logger_1.4.3        
 [3] lubridate_1.9.3             forcats_1.0.0              
 [5] purrr_1.0.2                 readr_2.1.5                
 [7] tidyverse_2.0.0             stringr_1.5.1              
 [9] tidyr_1.3.0                 scales_1.3.0               
[11] data.table_1.14.10          readxl_1.4.3               
[13] naniar_1.0.0                glmpca_0.2.0               
[15] broom_1.0.5                 cowplot_1.1.2              
[17] glue_1.7.0                  ggfortify_0.4.16           
[19] stargazer_5.2.3             AnnotationHub_3.10.0       
[21] BiocFileCache_2.10.1        dbplyr_2.4.0               
[23] singscore_1.22.0            EnsDb.Hsapiens.v86_2.99.0  
[25] ensembldb_2.26.0            AnnotationFilter_1.26.0    
[27] GenomicFeatures_1.54.1      AnnotationDbi_1.64.1       
[29] DT_0.31                     variancePartition_1.32.2   
[31] BiocParallel_1.36.0         limma_3.58.1               
[33] gridExtra_2.3               pander_0.6.5               
[35] ggvenn_0.1.10               ggplot2_3.4.4              
[37] dplyr_1.1.4                 corrplot_0.92              
[39] reshape2_1.4.4              tibble_3.2.1               
[41] magrittr_2.0.3              recount3_1.12.0            
[43] SummarizedExperiment_1.32.0 Biobase_2.62.0             
[45] GenomicRanges_1.54.1        GenomeInfoDb_1.38.5        
[47] IRanges_2.36.0              S4Vectors_0.40.2           
[49] BiocGenerics_0.48.1         MatrixGenerics_1.14.0      
[51] matrixStats_1.2.0           workflowr_1.7.1            

loaded via a namespace (and not attached):
  [1] fs_1.6.3                      ProtGenerics_1.34.0          
  [3] bitops_1.0-7                  httr_1.4.7                   
  [5] numDeriv_2016.8-1.1           doRNG_1.8.6                  
  [7] backports_1.4.1               utf8_1.2.4                   
  [9] R6_2.5.1                      lazyeval_0.2.2               
 [11] withr_3.0.0                   prettyunits_1.2.0            
 [13] cli_3.6.2                     formatR_1.14                 
 [15] labeling_0.4.3                sass_0.4.8                   
 [17] mvtnorm_1.2-4                 recount_1.28.0               
 [19] Rsamtools_2.18.0              foreign_0.8-86               
 [21] R.utils_2.12.3                rentrez_1.2.3                
 [23] sessioninfo_1.2.2             BSgenome_1.70.1              
 [25] rstudioapi_0.15.0             RSQLite_2.3.5                
 [27] generics_0.1.3                BiocIO_1.12.0                
 [29] gtools_3.9.5                  crosstalk_1.2.1              
 [31] vroom_1.6.5                   Matrix_1.6-5                 
 [33] fansi_1.0.6                   abind_1.4-5                  
 [35] R.methodsS3_1.8.2             lifecycle_1.0.4              
 [37] whisker_0.4.1                 yaml_2.3.8                   
 [39] edgeR_4.0.11                  qvalue_2.34.0                
 [41] gplots_3.1.3                  SparseArray_1.2.3            
 [43] blob_1.2.4                    promises_1.2.1               
 [45] crayon_1.5.2                  lattice_0.22-5               
 [47] annotate_1.80.0               KEGGREST_1.42.0              
 [49] pillar_1.9.0                  knitr_1.45                   
 [51] rjson_0.2.21                  boot_1.3-28.1                
 [53] corpcor_1.6.10                codetools_0.2-19             
 [55] getPass_0.2-4                 downloader_0.4               
 [57] vctrs_0.6.5                   png_0.1-8                    
 [59] Rdpack_2.6                    cellranger_1.1.0             
 [61] gtable_0.3.4                  cachem_1.0.8                 
 [63] xfun_0.41                     rbibutils_2.2.16             
 [65] S4Arrays_1.2.0                mime_0.12                    
 [67] iterators_1.0.14              statmod_1.5.0                
 [69] interactiveDisplayBase_1.40.0 ellipsis_0.3.2               
 [71] nlme_3.1-164                  pbkrtest_0.5.2               
 [73] bit64_4.0.5                   progress_1.2.3               
 [75] EnvStats_2.8.1                filelock_1.0.3               
 [77] rprojroot_2.0.4               GenomicFiles_1.38.0          
 [79] bslib_0.6.1                   rpart_4.1.23                 
 [81] KernSmooth_2.23-22            Hmisc_5.1-1                  
 [83] colorspace_2.1-0              DBI_1.2.1                    
 [85] nnet_7.3-19                   tidyselect_1.2.0             
 [87] processx_3.8.3                bit_4.0.5                    
 [89] compiler_4.3.3                curl_5.2.0                   
 [91] git2r_0.33.0                  graph_1.80.0                 
 [93] htmlTable_2.4.2               derfinder_1.36.0             
 [95] xml2_1.3.6                    DelayedArray_0.28.0          
 [97] rtracklayer_1.62.0            checkmate_2.3.1              
 [99] caTools_1.18.2                remaCor_0.0.16               
[101] callr_3.7.3                   rappdirs_0.3.3               
[103] digest_0.6.34                 minqa_1.2.6                  
[105] rmarkdown_2.25                GEOquery_2.70.0              
[107] aod_1.3.3                     XVector_0.42.0               
[109] RhpcBLASctl_0.23-42           base64enc_0.1-3              
[111] htmltools_0.5.7               pkgconfig_2.0.3              
[113] lme4_1.1-35.1                 highr_0.10                   
[115] fastmap_1.1.1                 rlang_1.1.3                  
[117] htmlwidgets_1.6.4             shiny_1.8.0                  
[119] farver_2.1.1                  jquerylib_0.1.4              
[121] jsonlite_1.8.8                R.oo_1.25.0                  
[123] VariantAnnotation_1.48.1      RCurl_1.98-1.14              
[125] Formula_1.2-5                 GenomeInfoDbData_1.2.11      
[127] munsell_0.5.0                 Rcpp_1.0.12                  
[129] visdat_0.6.0                  stringi_1.8.3                
[131] zlibbioc_1.48.0               MASS_7.3-60.0.1              
[133] bumphunter_1.44.0             plyr_1.8.9                   
[135] parallel_4.3.3                Biostrings_2.70.1            
[137] splines_4.3.3                 hms_1.1.3                    
[139] derfinderHelper_1.36.0        locfit_1.5-9.8               
[141] ps_1.7.6                      rngtools_1.5.2               
[143] biomaRt_2.58.0                futile.options_1.0.1         
[145] BiocVersion_3.18.1            XML_3.99-0.16                
[147] evaluate_0.23                 lambda.r_1.2.4               
[149] BiocManager_1.30.22           foreach_1.5.2                
[151] nloptr_2.0.3                  tzdb_0.4.0                   
[153] httpuv_1.6.13                 xtable_1.8-4                 
[155] restfulr_0.0.15               fANCOVA_0.6-1                
[157] later_1.3.2                   lmerTest_3.1-3               
[159] memoise_2.0.1                 GenomicAlignments_1.38.2     
[161] cluster_2.1.6                 timechange_0.3.0             
[163] GSEABase_1.64.0               here_1.0.1